Glyma19g38120 - SoyBase

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Report for Sequence Feature Glyma19g38120

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45118207
stop:	45123025
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g38120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22400	AT	Annotation by Michelle Graham. TAIR10: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain \| chr5:7423050-7425335 REVERSE LENGTH=466	SoyBase	E_val: 1.00E-150	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR23177	Panther	MKIAA1688 PROTEIN	JGI		ISS
PTHR23177:SF2	Panther	GTPASE ACTIVATING PROTEIN	JGI		ISS
PF00620	PFAM	RhoGAP domain	JGI		ISS
PF00786	PFAM	P21-Rho-binding domain	JGI		ISS
UniRef100_I1NAP6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAP6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O82458	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rac GTPase activating protein 1 n=1 Tax=Lotus japonicus RepID=O82458_LOTJA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g38120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g38120

Paralog	Evidence	Comments
Glyma03g35480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g38120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g38120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g38120

Limit To All Plant Sequences

>Glyma19g38120.1   sequence type=CDS   gene model=Glyma19g38120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGAAGTGCTTCAGTTGCCTTCATCCTCAAGCTGTTCGCGTCGTCCATGTGGTAGTCTCACACCCAATGATGGGTCGCACCCAATTTCCCTTATTAACGCTCCTCCCACTGTGGAAGATCAAAGGGTGGAAATTGAAGAAGAAGAAGAGAAAGAAAGGGAAAGGGAGAGGGATCAGCTTTCTATTTTGACCCTTTTGATTGCTACGTTCAGGAAATCTTTGATTGGGTGCAGCACCACTACAACTTCTTCTTCTTCTTCTTCTTCTTCTTCCATGGAGATTGGGTGGCCTTCCAATGTGAGACACGTGGCACATGTCACCTTTGATCGCTTCCATGGCTTTCTCGGTTTGCCTGTTGAGTTCGAACCCGAAGTTCCCAGGAGACCTCCCAGCGCTAGTGCAAATGTTTTTGGAGTTTCAACAGAATCTATGCAGCTTTCTTTTGATGCCAGAGGGAATAGTGTACCTACAATACTGCTGTTAATGCAAAGACATTTGTATGCACAAGGAGGTCTGCAGGCTGAAGGAATCTTCAGAATTAATGCTGAAAATGGTCAAGAGGAGTTTGTGAGGGAACAATTAAACAGAGGTGTAGTACCAGATGGCATTGATGTGCACTGCTTGGCAGGTCTCATAAAGGCTTGGTTTAGAGAACTACCAACTGGAGTATTGGACCCTCTTTTGCCAGAGCAGGTGATGCAATCCCAGTCAGAAGAAGAATGTGCTCAGCTTGTGAGGCTTCTTCCTCCAACAGAAGCTGCTTTGCTAGATTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGTAATATTGCAATGGTTTTTGCACCAAACATGACTCAAATGGCAGATCCTTTGACTGCTTTGATGTATGCAGTACAAGTCATGAATTTTCTCAAGACTCTTGTTGTGAAGGCATTGAGAGAAAGAGAGGAATCTATTGTAAAATCAAATCCTGTTCCTGACCTTAATTCTTTTGACGATGATGGGAACCATAGCAATTCAGAAATGCTTGACAAGGAGGACAGTGAAAATGGAAATGATTGTAGCGATGACGATGAAGATACAGTGTTTGTCACTGCAGAGCCTTCTCAACAAAGCCCTAGTCATCTTACAGAAGATGGTTGTGAAACTGAAACCGCGACCAAATCCAAAAGTTTGCCAGCATCTACTGAGAACTATATTTCAAGTGGAAATAGGTTGCTGGTTGACAGTTGTCCTTGCAATCTTGTATCTCAAATTTGCTCTTTGGCAATTGGACTTCAAGACTGTGGCCTCGCTACCGGGCAGACAAAGGGGGATCAAGCAAAAATTTGCAGGAGCAAAAGCCTTCAGTTGAGCACTTATGACACGGACAAGTGTTCCAGAAAGGTGATTCAGCTTCCAGTAACCGGAGCTGCAGAGAAGAACCTTGGAATGGCAATTATTGAGCGTATAAATTCGAGAACGGAGTTGGCTGAAGCTTGGCGTTGA

Predicted protein sequences of Glyma19g38120

Limit To All Plant Sequences

>Glyma19g38120.1   sequence type=predicted peptide   gene model=Glyma19g38120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEVLQLPSSSSCSRRPCGSLTPNDGSHPISLINAPPTVEDQRVEIEEEEEKERERERDQLSILTLLIATFRKSLIGCSTTTTSSSSSSSSSMEIGWPSNVRHVAHVTFDRFHGFLGLPVEFEPEVPRRPPSASANVFGVSTESMQLSFDARGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEFVREQLNRGVVPDGIDVHCLAGLIKAWFRELPTGVLDPLLPEQVMQSQSEEECAQLVRLLPPTEAALLDWAINLMADVAQMENLNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLVVKALREREESIVKSNPVPDLNSFDDDGNHSNSEMLDKEDSENGNDCSDDDEDTVFVTAEPSQQSPSHLTEDGCETETATKSKSLPASTENYISSGNRLLVDSCPCNLVSQICSLAIGLQDCGLATGQTKGDQAKICRSKSLQLSTYDTDKCSRKVIQLPVTGAAEKNLGMAIIERINSRTELAEAWR*

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