Report for Sequence Feature Glyma19g38070
Feature Type: gene_model
Chromosome: Gm19
Start: 45085014
stop: 45093831
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g38070
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G57790 AT
Annotation by Michelle Graham. TAIR10: F-box family protein | chr1:21404578-21405636 REVERSE LENGTH=352
SoyBase E_val: 1.00E-100 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF00646 PFAM
F-box domain
JGI ISS
UniRef100_B9SWF2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription regulation, putative n=1 Tax=Ricinus communis RepID=B9SWF2_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1NAP1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NAP1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g38070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g38070
Paralog Evidence Comments
Glyma03g35440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g38070 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma19g38070
Transcripts of Glyma19g38070
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g38070.3 sequence type=transcript gene model=Glyma19g38070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTCTCGTTAACCTTTTCTGCAGTTTGTGTTTGTGTAATGTAGGAAGCAACTTCATTCTTCTCTCTCTCTGAAACGCAACTTCATTAGCCAATTAATTGGCTTCGCAAAATGTCGGGGAAGAGAAAGAGGAAGTTGAAATTATAATAGAAGAACAGTTGCTGAGGTGAAAAGTGAAAATTTGGAGATGCAATCCTGGGCTGATCTCCCTGCTGAACTCTTAGAATCGATCTTGTCCCGATTGATCCTAGCGGATAACATCCGTGCTTCTGCTGTTTGCAGGAGATGGCATTCTGTTGCCAGTGATGTACGTGTAGTAAACCAATCACCATGGCTTATGTATTTTCCAAAATTCGGTGACTGTTATGAATTCTATGACCCTGTGCAGCGTAAGACACACACCTTCGAGTTGCCAGAGTTGAATGGATCTAGAGTTTGTTATACAAAAGATGGTTGGTTATTGCTATACCGGCCCAGAACTCACAGAGTATTCTTCTTTAATCCCTTTACTCGGGAGCTGATCAAACTGCCAAGATTTGAGATGACATACCAGATTGTGGCCTTCTCTTGTGCTCCAACATCACCTGGCTGTGTTCTGTTTACTGTTAAGCATGTTAGTCCTACTGTTGTAGCTATTAGCACTTGTTATCCTGGGGCAACAGAATGGACCACTGTTAATTACCAAAACCGCTTGCCCTTTGTCAGTAGCATTTGGAATAAGCTTGTGTTTTGTAATGGGCTATTTTATTGTCTGAGCCTCACTGGTTGGCTTGGGGTGTTTGACCCAGTAGAATGTACTTGGAGTGTTCTGGCAGTACCTCCACCCAAATGCCCAGAGAACTTTTTTGCCAAAAACTGGTGGAAGGGAAAATTTATGACTGAGCATGAAGGAGATATATTAGTAATTTATACATGCTGTAGTGAAAACCCCATTATTTTTAAGTTAGATCAGACATTAATGAAATGGGAAGAGATGACAACACTAGATGGAGTAACTCTTTTTGCTAGTTTTTTGTCATCTCATTCAAGGACTGACCTCATTGGAATAATGAGGAACAGTGTCTACTTCTCCAAAGTTCGTTTCTATGGTAAGCGTTGCATTTCATTCTCTCTTGATGACTATAGATACTATCCCCGTAAACAGTGTCATGACTGGGGAGAACAAGACCCTTTTGAGAACATCTGGATTGAGCCACCAAAGGACTTTTCTGCTTGCATGTGAAGAATTTTAGTGAAGCAACATTTTTTATTCATCGTCAAGTCCTAAACCCTAATGCAGAACATGTGAATATTTGGAAACATTGCTATGTTTGCAGTCTGCATATAGGAGGCTAATATATGCAGAAAATGGAAGTTACTTGTAAAGGAATGGACCTCTGTAAGAGGGAAGCGAAAAAGACTTGCCTCCTTGGTTAGTCTTTGCAGATTCTGGAGCAATAAGATTTTTTGCCCCAGCACAGCAGAAGACATTAGAGTTGATGCTGATCTAGAGATTAATTATTATTTTGGGCATGATCCATAGTTTATTATATGTAGGAATGGACATCTGTAAAAGGGAAGCGAAAAAGAGTTGCCTCCTTGGTCATTTTGTCTTTGCAGATCCTGAAATATTTAAGTTTTTTTGCCCCTACACAGCAGGGCTTATGCAGAACATTAGAGACTATACTAATAAAGAGATTTATTAATTACCTTTGTTTATTGTTACTATTGATATTAGTCTTGTGTTTAGTATTAGTATCAATTAGCATTTGATTCAATCAAAGTTGTATAAAAACCGTGCTTTATTAGGATTCGGCTCTTCTGAAACGAAGAGATGTAAATTGAAATATGAACTGCATGTGATTTGTCTCAAATATGAGTTAATTATATCCCTTTATTTTTTA
Coding sequences of Glyma19g38070
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g38070.1 sequence type=CDS gene model=Glyma19g38070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGGGGAAGAGAAAGAGGAAGTTGAAATTGTTAAGCGATGCAATCACAGATAATAGAAGAACAGTTGCTGAGGTGAAAAGTGAAAATTTGGAGATGCAATCCTGGGCTGATCTCCCTGCTGAACTCTTAGAATCGATCTTGTCCCGATTGATCCTAGCGGATAACATCCGTGCTTCTGCTGTTTGCAGGAGATGGCATTCTGTTGCCAGTGATGTACGTGTAGTAAACCAATCACCATGGCTTATGTATTTTCCAAAATTCGGTGACTGTTATGAATTCTATGACCCTGTGCAGCGTAAGACACACACCTTCGAGTTGCCAGAGTTGAATGGATCTAGAGTTTGTTATACAAAAGATGGTTGGTTATTGCTATACCGGCCCAGAACTCACAGAGTATTCTTCTTTAATCCCTTTACTCGGGAGCTGATCAAACTGCCAAGATTTGAGATGACATACCAGATTGTGGCCTTCTCTTGTGCTCCAACATCACCTGGCTGTGTTCTGTTTACTGTTAAGCATGTTAGTCCTACTGTTGTAGCTATTAGCACTTGTTATCCTGGGGCAACAGAATGGACCACTGTTAATTACCAAAACCGCTTGCCCTTTGTCAGTAGCATTTGGAATAAGCTTGTGTTTTGTAATGGGCTATTTTATTGTCTGAGCCTCACTGGTTGGCTTGGGGTGTTTGACCCAGTAGAATGTACTTGGAGTGTTCTGGCAGTACCTCCACCCAAATGCCCAGAGAACTTTTTTGCCAAAAACTGGTGGAAGGGAAAATTTATGACTGAGCATGAAGGAGATATATTAGTAATTTATACATGCTGTAGTGAAAACCCCATTATTTTTAAGTTAGATCAGACATTAATGAAATGGGAAGAGATGACAACACTAGATGGAGTAACTCTTTTTGCTAGTTTTTTGTCATCTCATTCAAGGACTGACCTCATTGGAATAATGAGGAACAGTGTCTACTTCTCCAAAGTTCGTTTCTATGGTAAGCGTTGCATTTCATTCTCTCTTGATGACTATAGATACTATCCCCGTAAACAGTGTCATGACTGGGGAGAACAAGACCCTTTTGAGAACATCTGGATTGAGCCACCAAAGGACTTTTCTGCTTGCATGTGA
>Glyma19g38070.3 sequence type=CDS gene model=Glyma19g38070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAATCCTGGGCTGATCTCCCTGCTGAACTCTTAGAATCGATCTTGTCCCGATTGATCCTAGCGGATAACATCCGTGCTTCTGCTGTTTGCAGGAGATGGCATTCTGTTGCCAGTGATGTACGTGTAGTAAACCAATCACCATGGCTTATGTATTTTCCAAAATTCGGTGACTGTTATGAATTCTATGACCCTGTGCAGCGTAAGACACACACCTTCGAGTTGCCAGAGTTGAATGGATCTAGAGTTTGTTATACAAAAGATGGTTGGTTATTGCTATACCGGCCCAGAACTCACAGAGTATTCTTCTTTAATCCCTTTACTCGGGAGCTGATCAAACTGCCAAGATTTGAGATGACATACCAGATTGTGGCCTTCTCTTGTGCTCCAACATCACCTGGCTGTGTTCTGTTTACTGTTAAGCATGTTAGTCCTACTGTTGTAGCTATTAGCACTTGTTATCCTGGGGCAACAGAATGGACCACTGTTAATTACCAAAACCGCTTGCCCTTTGTCAGTAGCATTTGGAATAAGCTTGTGTTTTGTAATGGGCTATTTTATTGTCTGAGCCTCACTGGTTGGCTTGGGGTGTTTGACCCAGTAGAATGTACTTGGAGTGTTCTGGCAGTACCTCCACCCAAATGCCCAGAGAACTTTTTTGCCAAAAACTGGTGGAAGGGAAAATTTATGACTGAGCATGAAGGAGATATATTAGTAATTTATACATGCTGTAGTGAAAACCCCATTATTTTTAAGTTAGATCAGACATTAATGAAATGGGAAGAGATGACAACACTAGATGGAGTAACTCTTTTTGCTAGTTTTTTGTCATCTCATTCAAGGACTGACCTCATTGGAATAATGAGGAACAGTGTCTACTTCTCCAAAGTTCGTTTCTATGGTAAGCGTTGCATTTCATTCTCTCTTGATGACTATAGATACTATCCCCGTAAACAGTGTCATGACTGGGGAGAACAAGACCCTTTTGAGAACATCTGGATTGAGCCACCAAAGGACTTTTCTGCTTGCATGTGA
Predicted protein sequences of Glyma19g38070
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g38070.1 sequence type=predicted peptide gene model=Glyma19g38070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSGKRKRKLKLLSDAITDNRRTVAEVKSENLEMQSWADLPAELLESILSRLILADNIRASAVCRRWHSVASDVRVVNQSPWLMYFPKFGDCYEFYDPVQRKTHTFELPELNGSRVCYTKDGWLLLYRPRTHRVFFFNPFTRELIKLPRFEMTYQIVAFSCAPTSPGCVLFTVKHVSPTVVAISTCYPGATEWTTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPVECTWSVLAVPPPKCPENFFAKNWWKGKFMTEHEGDILVIYTCCSENPIIFKLDQTLMKWEEMTTLDGVTLFASFLSSHSRTDLIGIMRNSVYFSKVRFYGKRCISFSLDDYRYYPRKQCHDWGEQDPFENIWIEPPKDFSACM*
>Glyma19g38070.3 sequence type=predicted peptide gene model=Glyma19g38070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQSWADLPAELLESILSRLILADNIRASAVCRRWHSVASDVRVVNQSPWLMYFPKFGDCYEFYDPVQRKTHTFELPELNGSRVCYTKDGWLLLYRPRTHRVFFFNPFTRELIKLPRFEMTYQIVAFSCAPTSPGCVLFTVKHVSPTVVAISTCYPGATEWTTVNYQNRLPFVSSIWNKLVFCNGLFYCLSLTGWLGVFDPVECTWSVLAVPPPKCPENFFAKNWWKGKFMTEHEGDILVIYTCCSENPIIFKLDQTLMKWEEMTTLDGVTLFASFLSSHSRTDLIGIMRNSVYFSKVRFYGKRCISFSLDDYRYYPRKQCHDWGEQDPFENIWIEPPKDFSACM*