Glyma19g37980 - SoyBase

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Report for Sequence Feature Glyma19g37980

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45035813
stop:	45040501
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g37980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22440	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L1p/L10e family \| chr5:7435328-7436486 REVERSE LENGTH=217	SoyBase	E_val: 1.00E-124	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0015934	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1570	KOG	60S ribosomal protein L10A	JGI		ISS
PTHR23105	Panther	60S RIBOSOMAL PROTEIN L10A - RELATED	JGI		ISS
PTHR23105:SF4	Panther	60S RIBOSOMAL PROTEIN L10A	JGI		ISS
PF00687	PFAM	Ribosomal protein L1p/L10e family	JGI		ISS
UniRef100_C6T5C1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein n=1 Tax=Glycine max RepID=C6T5C1_SOYBN	SoyBase	E_val: 9.00E-156	ISS
UniRef100_C6T5C1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ribosomal protein n=1 Tax=Glycine max RepID=C6T5C1_SOYBN	SoyBase	E_val: 9.00E-156	ISS

Expression Patterns of Glyma19g37980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g37980 not represented in the dataset	Glyma19g37980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g37980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g37980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g37980

Limit To All Plant Sequences

>Glyma19g37980.2   sequence type=transcript   gene model=Glyma19g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATATTTAAGTTATTTTAAATTTTATGGAGATGTTTAGGGTTTTTATGAACCCCGTCGCTCAGTAATTGTACCCGGATAGGCGGCTAAGAATAATAATCTGAGACGACCAACCTCAGCCTCTTACCATGAGTAAGCTACAAAGTGATGCACTGAGAGAGGCAATTTCCCAGGTGGTGAGTAATTCAAAGGAGAAAAATCGTAAATTCACCGAGACTATTGAGCTGCAAATTGGATTGAAGAACTATGATCCTCAGAAAGATAAGCGTTTCAGTGGTTCTGTTAAGCTTCCGCATATTCCTCGCCCTAAGATGAAAATCTGCATGCTCGGTGATGCTCAGCACGTTGAAGAGGCGGAAAAAATTGGGCTGGACTACATGGATGTGGAAGCACTGAAGAAACTCAATAAAAACAAAAAACTTGTGAAGAAGCTTGCCAAGAAATATCATGTTTTTCTAGCTTCTGAAGCAGTCATCAAGCAAATTCCTCGTCTTTTGGGGCCTGGTTTAAATAAGGCAGGTAAATTTCCAACATTAGTGACTCATCAGGAGTCCTTGGAGTCAAAAGTTAATGAAACAAAGGCAATGGTGAAGTTTCAACTTAAGAAAGTTCTTTGTATGGGTGTTGCCGTTGGAAATTGCACAATGGAGGAGAAACAGATATTCCAGAATGTACAACTCAGTGTCAATTTCCTTGTTTCATTATTGAAGAAAAACTGGCAAAACGTGAGGTGCTTATACCTGAAGAGTACTATGGGGAGCGCAATCCGCGTATTTTAAATTCATATATATCTTCCATTTAAATATAATCATGGGCGAAGCCTCTTATGTTATGGACATGTAAGCGAGACATTATTGGTGACTGTCGATGCCTTTTCTTTGGCTTTTTTCATATTCTTTTGACGTCAATTTTGATGTCTTGAAAAAAATTACCAGTACCTTGTTCATTTGGTTTTTATTTGGTGTGCTTGCTTTGCTATTAACATTTGATAGGACACGTGGGTGGCTTTATGAATTGCTTTGCAATGTTCATACCAAGTAGCCACCACTTATACTCATTCAATTTTATTTATTGGACGCTAAACCTGGAAACTAAGGTAAAAAAGCCGAGTTT

Coding sequences of Glyma19g37980

Limit To All Plant Sequences

>Glyma19g37980.1   sequence type=CDS   gene model=Glyma19g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAAGCTACAAAGTGATGCACTGAGAGAGGCAATTTCCCAGGTGGTGAGTAATTCAAAGGAGAAAAATCGTAAATTCACCGAGACTATTGAGCTGCAAATTGGATTGAAGAACTATGATCCTCAGAAAGATAAGCGTTTCAGTGGTTCTGTTAAGCTTCCGCATATTCCTCGCCCTAAGATGAAAATCTGCATGCTCGGTGATGCTCAGCACGTTGAAGAGGCGGAAAAAATTGGGCTGGACTACATGGATGTGGAAGCACTGAAGAAACTCAATAAAAACAAAAAACTTGTGAAGAAGCTTGCCAAGAAATATCATGTTTTTCTAGCTTCTGAAGCAGTCATCAAGCAAATTCCTCGTCTTTTGGGGCCTGGTTTAAATAAGGCAGGTAAATTTCCAACATTAGTGACTCATCAGGAGTCCTTGGAGTCAAAAGTTAATGAAACAAAGGCAATGGTGAAGTTTCAACTTAAGAAAGTTCTTTGTATGGGTGTTGCCGTTGGAAATTGCACAATGGAGGAGAAACAGATATTCCAGAATGTACAACTCAGTGTCAATTTCCTTGTTTCATTATTGAAGAAAAACTGGCAAAACGTGAGGTGCTTATACCTGAAGAGTACTATGGGGAGCGCAATCCGCGTATTTTAA

>Glyma19g37980.2   sequence type=CDS   gene model=Glyma19g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAAGCTACAAAGTGATGCACTGAGAGAGGCAATTTCCCAGGTGGTGAGTAATTCAAAGGAGAAAAATCGTAAATTCACCGAGACTATTGAGCTGCAAATTGGATTGAAGAACTATGATCCTCAGAAAGATAAGCGTTTCAGTGGTTCTGTTAAGCTTCCGCATATTCCTCGCCCTAAGATGAAAATCTGCATGCTCGGTGATGCTCAGCACGTTGAAGAGGCGGAAAAAATTGGGCTGGACTACATGGATGTGGAAGCACTGAAGAAACTCAATAAAAACAAAAAACTTGTGAAGAAGCTTGCCAAGAAATATCATGTTTTTCTAGCTTCTGAAGCAGTCATCAAGCAAATTCCTCGTCTTTTGGGGCCTGGTTTAAATAAGGCAGGTAAATTTCCAACATTAGTGACTCATCAGGAGTCCTTGGAGTCAAAAGTTAATGAAACAAAGGCAATGGTGAAGTTTCAACTTAAGAAAGTTCTTTGTATGGGTGTTGCCGTTGGAAATTGCACAATGGAGGAGAAACAGATATTCCAGAATGTACAACTCAGTGTCAATTTCCTTGTTTCATTATTGAAGAAAAACTGGCAAAACGTGAGGTGCTTATACCTGAAGAGTACTATGGGGAGCGCAATCCGCGTATTTTAA

Predicted protein sequences of Glyma19g37980

Limit To All Plant Sequences

>Glyma19g37980.1   sequence type=predicted peptide   gene model=Glyma19g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKLQSDALREAISQVVSNSKEKNRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHVFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNCTMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGSAIRVF*

>Glyma19g37980.2   sequence type=predicted peptide   gene model=Glyma19g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKLQSDALREAISQVVSNSKEKNRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHVFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNCTMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGSAIRVF*

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