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Report for Sequence Feature Glyma19g37951

Feature Type:gene_model
Chromosome:Gm19
Start:45023787
stop:45027297
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g37951
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52740AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19546446-19546868 REVERSE LENGTH=140 SoyBaseE_val: 4.00E-32ISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009813GO-bp Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_Q9LXJ1UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT3g52740/F3C22_140 n=1 Tax=Arabidopsis thaliana RepID=Q9LXJ1_ARATH SoyBaseE_val: 2.00E-29ISS
UniRef100_UPI000233DEB3UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233DEB3 related cluster n=1 Tax=unknown RepID=UPI000233DEB3 SoyBaseE_val: 3.00E-134ISS

Expression Patterns of Glyma19g37951
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g37951 not represented in the dataset
Glyma19g37951 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g37951
ParalogEvidenceComments
Glyma03g35300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g37951 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g37951
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g37951
>Glyma19g37951.2   sequence type=transcript   gene model=Glyma19g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGTGTAAACTAAATTTCCACCCACTTCCCTTTGCTTTATTCCCCACACAAACAAACCCCATTTTCAAATCTCCTCTACACAACATCAAGGATTACAGCACACACAAACAAATACTCTCTCTCTCTCTCCATGTAAAGATAACAAACAACAACACCTCATTCATTCATGGCTCACCAATCCTCTTCTTCTGAATCTGATGACCGCCAGATTCCTTCTCATCATCAGCCATTGGACCTAAACAGTCCCCATCCTTCTAAAGATATCATCTTCAACAACAACATGGAACTACAACAAGAAGAGAGCAACCTTAACAAGCATGAATATGATGAAGATATTAGAGATAAAGATAAGGATGTTGTTACTACACAAAACCCATCTGCAGCTTCAGAAACGACCCTTCTTTGTTGCAACGAGGAGAATATGGCATTACAAGAAGAAGAGACTTCAGATGTTGCAGCAGCAAAAGAAGAAGAAGAAGAAGAAGATAGTGGACGCGAGAGGCTGAATAGGCATAGAGTTGAAGTGGCTGGGAGGGTATGGATTCCTGATATATGGGGTCAGGAGGAGCTATTGAAGGATTGGATAGATTGCACTGCATTTGATGCTACTTTAGTTCCAAGCAGAATCTCCACTGCACGAGAGGCTTTGGTTCAAGAGTGTACAAGAGCCAATTCTGCTGGACTAAGAATAGAGAACAGGGAAAAGACAGTTACGTATAATTCGGATTAAAAGATGCATCGTATTTTGTGAGAACTAGCTATGCGACCAATGTGGGCACGGGGTAGCTCGATTCGATTACCTGTTCTAATCCGTTCTGACAGCAAGTTGCCACACAGCGATTAGGACTTGGATTTCAATATAAGGATTTATCCCTTAATAACAACTGCACTAATGTAGAGGTTCAAAACATCCGCACGTTTTCAGACACCGAGAAGAGCACCTAAACAAAAGGATCTGATGCAAGTCGAAAAATACACGGAGAAACTGAGAAGGGTGATTCTTATATTAAGAAAAATTCGAAACCAGATTCTCCAGCTCGTCAGTATACTCGAACAGTAATGCAAATATAGAAGAATATTAGGCTCATTTCTTCAAAATAAAACATAGTTCAAATAGAAACTCGATGCAAATAAATAAAGTTGCAAATACAGTTAATGTTATAACTGTTTGACTGAGTGTTCTCTGCACTTCAGTTGTAAATAAAGAAACATCTGGCATTGGTTTGTCAAATCTTTTGCTACTCTTGTCCTTGTTATCAAGTACAAAAAGATTAAGAAATTCCAGGTTATTGATATGCACAAATAGCCAATAGAATTATAGAATCACAGT

>Glyma19g37951.3   sequence type=transcript   gene model=Glyma19g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGTGTAAACTAAATTTCCACCCACTTCCCTTTGCTTTATTCCCCACACAAACAAACCCCATTTTCAAATCTCCTCTACACAACATCAAGGATTACAGCACACACAAACAAATACTCTCTCTCTCTCTCCATGTAAAGATAACAAACAACAACACCTCATTCATTCATGGCTCACCAATCCTCTTCTTCTGAATCTGATGACCGCCAGATTCCTTCTCATCATCAGCCATTGGACCTAAACAGTCCCCATCCTTCTAAAGATATCATCTTCAACAACAACATGGAACTACAACAAGAAGAGAGCAACCTTAACAAGCATGAATATGATGAAGATATTAGAGATAAAGATAAGGATGTTGTTACTACACAAAACCCATCTGCAGCTTCAGAAACGACCCTTCTTTGTTGCAACGAGGAGAATATGGCATTACAAGAAGAAGAGACTTCAGATGTTGCAGCAGCAAAAGAAGAAGAAGAAGAAGAAGATAGTGGACGCGAGAGGCTGAATAGGCATAGAGTTGAAGTGGCTGGGAGGGTATGGATTCCTGATATATGGGGTCAGGAGGAGCTATTGAAGGATTGGATAGATTGCACTGCATTTGATGCTACTTTAGTTCCAAGCAGAATCTCCACTGCACGAGAGGCTTTGGTTCAAGAGTGTACAAGAGCCAATTCTGCTGGACTAAGAATAGAGAACAGGGAAAAGACAGTTACGTATAATTCGGATTAAAAGATGCATCGTATTTTGTGAGAACTAGCTATGCGACCAATGTGGGCACGGGGTAGCTCGATTCGATTACCTGTTCTAATCCGTTCTGACAGCAAGTTGCCACACAGCGATTAGTGAGTAATATATCTTTCCTTATCATTCTACCACTACAACTTACTGAAGCAAAGCATACTTACGATACTAGTTCACCCTAGGGTAAGTAATTTATGAGCCATTCCTGAGCAAAAATGAAAAGTTTAGTTGTGACTTGTGACAGTAATTACAATTTACAGTCACACTCCTGACTCACCTAAAAAATATAATATTCAATATCTGTTGTAAATTTTTAGTAAATATAACTAAAAAGAGAAAAATAACTATGAGGATGCCTGCACACCTAGCACTTCTATTAGGCTCCGCCATTATAAATATCTGCTACTCATACAGCAAATGTGGAAAACTAGTATGATATCAACTCCCACACCTTGATCGTCCCATCATCGCTTGCAGAGGCTAGTACCGGCTTCTCCTATTTAGTAAATAAGACTGTTACAAATTGCAGAGAAAGACACAGGAAGCAGAAAACAATGCTGATATAGGTCACCATTCTCGAAATATG
Coding sequences of Glyma19g37951
>Glyma19g37951.1   sequence type=CDS   gene model=Glyma19g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCACCAATCCTCTTCTTCTGAATCTGATGACCGCCAGATTCCTTCTCATCATCAGCCATTGGACCTAAACAGTCCCCATCCTTCTAAAGATATCATCTTCAACAACAACATGGAACTACAACAAGAAGAGAGCAACCTTAACAAGCATGAATATGATGAAGATATTAGAGATAAAGATAAGGATGTTGTTACTACACAAAACCCATCTGCAGCTTCAGAAACGACCCTTCTTTGTTGCAACGAGGAGAATATGGCATTACAAGAAGAAGAGACTTCAGATGTTGCAGCAGCAAAAGAAGAAGAAGAAGAAGAAGATAGTGGACGCGAGAGGCTGAATAGGCATAGAGTTGAAGTGGCTGGGAGGGTATGGATTCCTGATATATGGGGTCAGGAGGAGCTATTGAAGGATTGGATAGATTGCACTGCATTTGATGCTACTTTAGTTCCAAGCAGAATCTCCACTGCACGAGAGGCTTTGGTTCAAGAGTGTACAAGAGCCAATTCTGCTGGACTAAGAATAGAGAACAGGGAAAAGACAGTTACGTATAATTCGGATTAA

>Glyma19g37951.2   sequence type=CDS   gene model=Glyma19g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCACCAATCCTCTTCTTCTGAATCTGATGACCGCCAGATTCCTTCTCATCATCAGCCATTGGACCTAAACAGTCCCCATCCTTCTAAAGATATCATCTTCAACAACAACATGGAACTACAACAAGAAGAGAGCAACCTTAACAAGCATGAATATGATGAAGATATTAGAGATAAAGATAAGGATGTTGTTACTACACAAAACCCATCTGCAGCTTCAGAAACGACCCTTCTTTGTTGCAACGAGGAGAATATGGCATTACAAGAAGAAGAGACTTCAGATGTTGCAGCAGCAAAAGAAGAAGAAGAAGAAGAAGATAGTGGACGCGAGAGGCTGAATAGGCATAGAGTTGAAGTGGCTGGGAGGGTATGGATTCCTGATATATGGGGTCAGGAGGAGCTATTGAAGGATTGGATAGATTGCACTGCATTTGATGCTACTTTAGTTCCAAGCAGAATCTCCACTGCACGAGAGGCTTTGGTTCAAGAGTGTACAAGAGCCAATTCTGCTGGACTAAGAATAGAGAACAGGGAAAAGACAGTTACGTATAATTCGGATTAA

>Glyma19g37951.3   sequence type=CDS   gene model=Glyma19g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCACCAATCCTCTTCTTCTGAATCTGATGACCGCCAGATTCCTTCTCATCATCAGCCATTGGACCTAAACAGTCCCCATCCTTCTAAAGATATCATCTTCAACAACAACATGGAACTACAACAAGAAGAGAGCAACCTTAACAAGCATGAATATGATGAAGATATTAGAGATAAAGATAAGGATGTTGTTACTACACAAAACCCATCTGCAGCTTCAGAAACGACCCTTCTTTGTTGCAACGAGGAGAATATGGCATTACAAGAAGAAGAGACTTCAGATGTTGCAGCAGCAAAAGAAGAAGAAGAAGAAGAAGATAGTGGACGCGAGAGGCTGAATAGGCATAGAGTTGAAGTGGCTGGGAGGGTATGGATTCCTGATATATGGGGTCAGGAGGAGCTATTGAAGGATTGGATAGATTGCACTGCATTTGATGCTACTTTAGTTCCAAGCAGAATCTCCACTGCACGAGAGGCTTTGGTTCAAGAGTGTACAAGAGCCAATTCTGCTGGACTAAGAATAGAGAACAGGGAAAAGACAGTTACGTATAATTCGGATTAA
Predicted protein sequences of Glyma19g37951
>Glyma19g37951.1   sequence type=predicted peptide   gene model=Glyma19g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHQSSSSESDDRQIPSHHQPLDLNSPHPSKDIIFNNNMELQQEESNLNKHEYDEDIRDKDKDVVTTQNPSAASETTLLCCNEENMALQEEETSDVAAAKEEEEEEDSGRERLNRHRVEVAGRVWIPDIWGQEELLKDWIDCTAFDATLVPSRISTAREALVQECTRANSAGLRIENREKTVTYNSD*

>Glyma19g37951.2   sequence type=predicted peptide   gene model=Glyma19g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHQSSSSESDDRQIPSHHQPLDLNSPHPSKDIIFNNNMELQQEESNLNKHEYDEDIRDKDKDVVTTQNPSAASETTLLCCNEENMALQEEETSDVAAAKEEEEEEDSGRERLNRHRVEVAGRVWIPDIWGQEELLKDWIDCTAFDATLVPSRISTAREALVQECTRANSAGLRIENREKTVTYNSD*

>Glyma19g37951.3   sequence type=predicted peptide   gene model=Glyma19g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHQSSSSESDDRQIPSHHQPLDLNSPHPSKDIIFNNNMELQQEESNLNKHEYDEDIRDKDKDVVTTQNPSAASETTLLCCNEENMALQEEETSDVAAAKEEEEEEDSGRERLNRHRVEVAGRVWIPDIWGQEELLKDWIDCTAFDATLVPSRISTAREALVQECTRANSAGLRIENREKTVTYNSD*






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