Glyma19g37920 - SoyBase

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Report for Sequence Feature Glyma19g37920

Feature Type:	gene_model
Chromosome:	Gm19
Start:	45003895
stop:	45006066
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g37920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67190	AT	Annotation by Michelle Graham. TAIR10: F-box/RNI-like superfamily protein \| chr1:25133054-25134313 FORWARD LENGTH=419	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_G7L632	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/LRR-repeat protein n=1 Tax=Medicago truncatula RepID=G7L632_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NAM7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAM7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g37920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g37920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g194600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g37920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g37920

Limit To All Plant Sequences

>Glyma19g37920.1   sequence type=CDS   gene model=Glyma19g37920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCACCTTCCTGTTGAAGTGATTGGTAACATATTATCTCTTCTCGGTTCTGCCCGAGATGTTGTGGTTGCTTCTGTAACTTGTAAAAAATGGAGGGAAGCATGGCGCAATCACCTCCACAGTCTTTCATTCAACTACTGTGATTGGCCCCTCTTTCATGACTTTACCTCTGCTAGGTTGGAAATACTCATCACTCAGACAATCTTCCAAACCAAGGCACTGCAATCCCTGACCATATTCTTGGATGACGAGCACAAGTTCTCGGCTGCCCCGGTCATTGCTTGGCTTATGTATACTAGGGATTCGTTGCGCCAATTGCTTTACAATGTGAGGACAACCCCTTGTTTCAACATCATTGAGAAATGCAGCAGGCAGAGGTTGGAGGTGTTGGCCTTGGCTCGCAATCCGATCACCGGTGTTGACCCAAGCTACTTGAAGTTTCCTTGCTTGAAGTCGCTTTCGTTGAGTTTTATTAGCATCTCGGCGTTGGATTTGACCCTTCTTCTCTCTGCGTGTCCGAAGCTTGAAACCTTGGCTATGGTTGGTGTGGAGATTGCAATGTCAGATTCGCAGGCTTCCGTGGAGCTTAGCAGCGTTTCTTTGAAGTTTTTTGACCTTGAATTGTTTAGTTCGGATAAGTTTATATTGGAGGCGGATTTACTTGAGAAGCTTCATTTGAAAGATTGTAGCTTTGAGGCTTTTGAGCTGATTGGAAAGGGGACATTGAAGGTTTTGAAAATTGATGATGTGAATATTATCCATCTTGATATTGGGGATAGTACAGAAAACCTTGAGATTATAGATGTCTGTAACTTCACAGTCATGTGGCCAAAATTTTATCATATGATCTCAAAAGCATCAAAGTTATATAAGCTTCGGCTGTGGGGTGTTGTTTTTGATGATGAGGACGAGGTTGTTGATATAGAGACAATTTCTGTTTGCTTTCCTCAGTTGACACATTTGTCCTTAAGTTATGATTTAAGAGATGGAGTTCTTCATTATGGTTTGCAGGGTTTGTCTTGTTTGATGAATGTGGTGGTGCTGGAACTTGGATGGACTGTAATTAGTGATCTCTTCTCAGTATGGGTAGCTGGACTTTTGGAAGGTTGTCCCAATTTGAAAAAATTGGTCATTTATGGTTTTGTTTCAGAGGTCAAAACACATGAAGAGTGTCAAATTCTTGCCAGATTCTCAGAATTCATTCTTCAACTTGGAAGAAAATATGGGCATGTAAAGTTTGAGTTTGAATATGAGTAG

Predicted protein sequences of Glyma19g37920

Limit To All Plant Sequences

>Glyma19g37920.1   sequence type=predicted peptide   gene model=Glyma19g37920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHLPVEVIGNILSLLGSARDVVVASVTCKKWREAWRNHLHSLSFNYCDWPLFHDFTSARLEILITQTIFQTKALQSLTIFLDDEHKFSAAPVIAWLMYTRDSLRQLLYNVRTTPCFNIIEKCSRQRLEVLALARNPITGVDPSYLKFPCLKSLSLSFISISALDLTLLLSACPKLETLAMVGVEIAMSDSQASVELSSVSLKFFDLELFSSDKFILEADLLEKLHLKDCSFEAFELIGKGTLKVLKIDDVNIIHLDIGDSTENLEIIDVCNFTVMWPKFYHMISKASKLYKLRLWGVVFDDEDEVVDIETISVCFPQLTHLSLSYDLRDGVLHYGLQGLSCLMNVVVLELGWTVISDLFSVWVAGLLEGCPNLKKLVIYGFVSEVKTHEECQILARFSEFILQLGRKYGHVKFEFEYE*

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