Glyma19g37900 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g37900

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44992180
stop:	44996985
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g37900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36290	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr2:15208867-15210768 REVERSE LENGTH=364	SoyBase	E_val: 1.00E-119	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1454	KOG	Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)	JGI		ISS
PTHR10992	Panther	ALPHA/BETA HYDROLASE RELATED	JGI		ISS
PTHR10992:SF198	Panther	ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN	JGI		ISS
UniRef100_E0Y457	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Esterase/lipase superfamily protein n=1 Tax=Prunus armeniaca RepID=E0Y457_PRUAR	SoyBase	E_val: 5.00E-136	ISS
UniRef100_I1NAM5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NAM5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g37900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g37900

Paralog	Evidence	Comments
Glyma03g35260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g37900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g194400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g37900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g37900

Limit To All Plant Sequences

>Glyma19g37900.1   sequence type=CDS   gene model=Glyma19g37900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAGGGAGAAATGGAGAGTGGAGTGAACAGAAGAAAAAAATTCTGCAGCATCAGCCCGTGCTCATACCAGGAACCAAAATAAAAGCACTTCAATTCATCTCCCTTCGGTTTGTTACCCAAGACAGAATTTTTGGAACAGTGCTGGCAGTGTTGTTCATTGGGTTTGTAGCATGGGGTTATCAAGCTATTCAACCTCCTGCTTCAAAGATATGTGGATCTCCTAATGGGTCCACTATAACAGCACCCAGAATCAAACTAAGAGATGGAAGGAATTTAGCATACAAAGAGCATGGTGTCCCAAAAGATGTAGCCAAGCATAAAATCATCTTTGTCCATGGTTTTGATGCTTGCAGGCATGATGCCTATGTTTCCAAAACACTATCACCTGATGTTGCTGAGAAATTAGGGGTCTACATTGTATCTTTTGATAGACCCGGGTATGGGGAAAGTGATCCTGATCCAATTCAAACACTGAAGAGCCTGGCATTAGATATAGAAGAACTTGCTGATAAATTGGGATTAGGGCCAAATTCTACGTGCCTTATGTACATCCCTCACAGACTGGCAAGTGCAGTGCTCATAGCCCCAGTTCTCAACTACTGGTGGGCTGGTCTTCCTGCAAACTTAACTACTGAAGTTTTCTACCAACAAAAACTTCAAGACCAGTGGACAGTTTGTGTTGCTCACTACATACCATGGCTAACTTACTGTTGGAACACTCAAAGATGGTTCCCAGCTTCTAGTTTAATTGCTGACAGTATAGATCTTCTATCCCTTCAGGACAAAGAACTTTTGCCTAAGAGTATCAATTTAGGAGTAGATGCCATACCAGAAACACATAGCATCCGTGCAGAAGCACCATGGAATATGTATGGAGTGTCACTTAGCTCAGGTTCGGTCCATATTTGGCAAGGAGATGAAGATTTGATAGTGCCTGCTAAAGTGCAACGATACATTGCACAAAAGCTTCCGTGGATTCAGTATCATGAGCTTCAAGGTGCTGACCACTTGTTCCCTCATGTTGATGGTATGAGTGATACTATCATTATGTCACTTTTAAGTGGGAATTAA

Predicted protein sequences of Glyma19g37900

Limit To All Plant Sequences

>Glyma19g37900.1   sequence type=predicted peptide   gene model=Glyma19g37900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
RGRNGEWSEQKKKILQHQPVLIPGTKIKALQFISLRFVTQDRIFGTVLAVLFIGFVAWGYQAIQPPASKICGSPNGSTITAPRIKLRDGRNLAYKEHGVPKDVAKHKIIFVHGFDACRHDAYVSKTLSPDVAEKLGVYIVSFDRPGYGESDPDPIQTLKSLALDIEELADKLGLGPNSTCLMYIPHRLASAVLIAPVLNYWWAGLPANLTTEVFYQQKLQDQWTVCVAHYIPWLTYCWNTQRWFPASSLIADSIDLLSLQDKELLPKSINLGVDAIPETHSIRAEAPWNMYGVSLSSGSVHIWQGDEDLIVPAKVQRYIAQKLPWIQYHELQGADHLFPHVDGMSDTIIMSLLSGN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain