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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G36310 | AT | Annotation by Michelle Graham. TAIR10: uridine-ribohydrolase 1 | chr2:15224692-15226633 REVERSE LENGTH=336 | SoyBase | E_val: 0 | ISS |
| GO:0006152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleoside catabolic process | SoyBase | N/A | ISS |
| GO:0006218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: uridine catabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0045437 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: uridine nucleosidase activity | SoyBase | N/A | ISS |
| GO:0047622 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: adenosine nucleosidase activity | SoyBase | N/A | ISS |
| GO:0047724 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inosine nucleosidase activity | SoyBase | N/A | ISS |
| GO:0072585 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: xanthosine nucleotidase activity | SoyBase | N/A | ISS |
| KOG2938 | KOG | Predicted inosine-uridine preferring nucleoside hydrolase | JGI | ISS | |
| PTHR12304 | Panther | INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE | JGI | ISS | |
| PF01156 | PFAM | Inosine-uridine preferring nucleoside hydrolase | JGI | ISS | |
| UniRef100_G7L609 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Inosine-uridine preferring ribonucleoside hydrolase n=1 Tax=Medicago truncatula RepID=G7L609_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1NAL7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NAL7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma19g37830 not represented in the dataset |
Glyma19g37830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g35166 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g193700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g37830.2 sequence type=transcript gene model=Glyma19g37830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATGCGAAAAGGGATATTCAAGAAGGGGATTTGGATGCGCTGCGTGTGGCGTTTGGATTGGACGTAATTACAAAGGCAATAAAAGCTTCGTTGCACTCCACGCCAGCCAGCCAGCCAGCGAAGCCATTAAATATTATTTCTCCTCATCCGCTTCATCTTCCTCGCGTCAACTGTTCTCTTCTCCGATCCGATAATGGCCTCTCTATTCAACAATGCTAACGGCGTTCTCGGAAAATCCGAGAAGCTCATTATCGACACCGACCCTGGGATCGGTTAGTTTTCACTTTTTTTTACCGACTCTGCTTTTACTCTCTTCGTTTATTTACTACTTTTTCCCTTCATTTTTTTTATAAGAACACTTGAAAAACTGACGGAATTCACTTGTGAAATTGGAGTTTTAATTTGCAATATTTTGGATTGGAGATGCCAGATGAAGATGATTTTGATTGATGAGAATCGATCTTAGAATTTCCTTGTATTGATATCTGGATTGTGACTTTTCATTGGTTTTTTGAAAAGTAGTTTATTGTTTCATTAGTGAGATAGGAATGGCATTTTTGTGATTCTGCAGATGATAGCATGGCTATTTTTATGGCTTTTCAAAGTCCAGACGTGGAGGTTCTGGGTTTGACAACCATTTTTGGTAATACAACTACTGAAGTTTCCACACGCAATGCTTTGCTTTTGTGTGAGATCGCAGGCCGTGAAAATATTCCAGTTGCACAGGGAAGCCCTGAGCCGTTGAAGGGTGGAACGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAGAGTGCTAGTGAGTTTTTGGTTGAGAAAGTCTCGGAATATCCCGGTGAAGTATCTGTGCTAGCACTTGGACCACTAACAAATGTTGCTTTGGCAATCAAACGAGATTCTGCGTTTGCAAGCAAAGTGAAGAGAATAGTTATTCTTGGTGGTGCATTCTTTGCCTTGGGGAATGTGAATCCTGCTGCAGAAGCAAATATCCATGGGGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATGTTGTTGTTGTTGGAATAAACATTACAACCCAAGTCCAATTCACAGATGCTGATCTCCTTGATCTGAAGGAATCCAAAGGAAAGTATGCTCCCTTCTTGAGTGACATATGCAAATTCTATAGGGACTTTCATGTAAAATCTGACCGTGTCCATGGAATTTTCCTCCATGATCCTGTCAGTTTTGTGGCAGTTGTGCGTCCAGATCTTTTCACATACAAGAAGGGGGTAGTGAGGGTAGAGACACAAGGCATCTGTGTTGGGCACACACTTCTGGACCAAGGATTGAAAAAGTGGAATACGAGTAACCCATGGACGGGTTATTCTCCTGTTGCAGTTGCTTGGACTGTGAATGTCAAGGGAGTTCTTGATTATATCAGGGAGCTATTGATGAAACCCTGAAGTATAGGCTATAGGCATTTGTACTACCCATCTGACAGACAAAAGCATTGGAAAGTGATAGAAACGATAGCTTCTTATTTGCAAAAACATGTATAAGGTCATTTTCATTATTTCACTGAATGTCAATCAGAACTTTGGGCGTCAAGGATTCACAACCAGTTCTTACGCCGTTTAATATTATAAAGTTCATGTACCAATGGAATTCTCTACCTTCTTTGAGAAGAAAGCAGTCATTCTTTACTTTTCCTACCTCTGTCTGAACTTGCATATTGCTTCTTACTCTGGTACTATAGAATTTCGGTTTGAACATCGCACTAAAGACTTCTTCCG >Glyma19g37830.3 sequence type=transcript gene model=Glyma19g37830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATGCGAAAAGGGATATTCAAGAAGGGGATTTGGATGCGCTGCGTGTGGCGTTTGGATTGGACGTAATTACAAAGGCAATAAAAGCTTCGTTGCACTCCACGCCAGCCAGCCAGCCAGCGAAGCCATTAAATATTATTTCTCCTCATCCGCTTCATCTTCCTCGCGTCAACTGTTCTCTTCTCCGATCCGATAATGGCCTCTCTATTCAACAATGCTAACGGCGTTCTCGGAAAATCCGAGAAGCTCATTATCGACACCGACCCTGGGATCGATGATAGCATGGCTATTTTTATGGCTTTTCAAAGTCCAGACGTGGAGGTTCTGGGTTTGACAACCATTTTTGGTAATACAACTACTGAAGTTTCCACACGCAATGCTTTGCTTTTGTGTGAGATCGCAGGCCGTGAAAATATTCCAGTTGCACAGGGAAGCCCTGAGCCGTTGAAGGGTGGAACGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAGAGTGCTAGTGAGTTTTTGGTTGAGAAAGTCTCGGAATATCCCGGTGAAGTATCTGTGCTAGCACTTGGACCACTAACAAATGTTGCTTTGGCAATCAAACGAGATTCTGCGTTTGCAAGCAAAGTGAAGAGAATAGTTATTCTTGGTGGTGCATTCTTTGCCTTGGGGAATGTGAATCCTGCTGCAGAAGCAAATATCCATGGGGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATGTTGTTGTTGTTGGAATAAACATTACAACCCAAGTCCAATTCACAGATGCTGATCTCCTTGATCTGAAGGAATCCAAAGGAAAGTATGCTCCCTTCTTGAGTGACATATGCAAATTCTATAGGGACTTTCATGTAAAATCTGACCGTGTCCATGGAATTTTCCTCCATGATCCTGTCAGTTTTGTGGCAGTTGTGCGTCCAGATCTTTTCACATACAAGAAGGGGGTAGTGAGGGTAGAGACACAAGGCATCTGTGTTGGGCACACACTTCTGGACCAAGGATTGAAAAAGTGGAATACGAGTAACCCATGGACGGGTTATTCTCCTGTTGCAGTTGCTTGGACTGTGAATGTCAAGGGAGTTCTTGATTATATCAGGGAGCTATTGATGAAACCCTGAAGTATAGGCTATAGGCATTTGTACTACCCATCTGACAGACAAAAGCATTGGAAAGTGATAGAAACGATAGCTTCTTATTTGCAAAAACATGTATAAGGTCATTTTCATTATTTCACTGAATGTCAATCAGAACTTTGGGCGTCAAGGATTCACAACCAGTTCTTACGCCGTTTAATATTATAAAGTTCATGTACCAATGGAATTCTCTACCTTCTTTGAGAAGAAAGCAGTCATTCTTTACTTTTCCTACCTCTGTCTGAACTTGCATATTGCTTCTTACTCTGGTACTATAGAATTTCGGTTTGAACATCGCACTAAAGACTTCTTCCG
>Glyma19g37830.1 sequence type=CDS gene model=Glyma19g37830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTCTCTATTCAACAATGCTAACGGCGTTCTCGGAAAATCCGAGAAGCTCATTATCGACACCGACCCTGGGATCGATGATAGCATGGCTATTTTTATGGCTTTTCAAAGTCCAGACGTGGAGGTTCTGGGTTTGACAACCATTTTTGGTAATACAACTACTGAAGTTTCCACACGCAATGCTTTGCTTTTGTGTGAGATCGCAGGCCGTGAAAATATTCCAGTTGCACAGGGAAGCCCTGAGCCGTTGAAGGGTGGAACGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAGAGTGCTAGTGAGTTTTTGGTTGAGAAAGTCTCGGAATATCCCGGTGAAGTATCTGTGCTAGCACTTGGACCACTAACAAATGTTGCTTTGGCAATCAAACGAGATTCTGCGTTTGCAAGCAAAGTGAAGAGAATAGTTATTCTTGGTGGTGCATTCTTTGCCTTGGGGAATGTGAATCCTGCTGCAGAAGCAAATATCCATGGGGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATGTTGTTGTTGTTGGAATAAACATTACAACCCAAGTCCAATTCACAGATGCTGATCTCCTTGATCTGAAGGAATCCAAAGGAAAGTATGCTCCCTTCTTGAGTGACATATGCAAATTCTATAGGGACTTTCATGTAAAATCTGACCGTGTCCATGGAATTTTCCTCCATGATCCTGTCAGTTTTGTGGCAGTTGTGCGTCCAGATCTTTTCACATACAAGAAGGGGGTAGTGAGGGTAGAGACACAAGGCATCTGTGTTGGGCACACACTTCTGGACCAAGGATTGAAAAAGTGGAATACGAGTAACCCATGGACGGGTTATTCTCCTGTTGCAGTTGCTTGGACTGTGAATGTCAAGGGAGTTCTTGATTATATCAGGGAGCTATTGATGAAACCCTGA >Glyma19g37830.2 sequence type=CDS gene model=Glyma19g37830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTATTTTTATGGCTTTTCAAAGTCCAGACGTGGAGGTTCTGGGTTTGACAACCATTTTTGGTAATACAACTACTGAAGTTTCCACACGCAATGCTTTGCTTTTGTGTGAGATCGCAGGCCGTGAAAATATTCCAGTTGCACAGGGAAGCCCTGAGCCGTTGAAGGGTGGAACGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAGAGTGCTAGTGAGTTTTTGGTTGAGAAAGTCTCGGAATATCCCGGTGAAGTATCTGTGCTAGCACTTGGACCACTAACAAATGTTGCTTTGGCAATCAAACGAGATTCTGCGTTTGCAAGCAAAGTGAAGAGAATAGTTATTCTTGGTGGTGCATTCTTTGCCTTGGGGAATGTGAATCCTGCTGCAGAAGCAAATATCCATGGGGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATGTTGTTGTTGTTGGAATAAACATTACAACCCAAGTCCAATTCACAGATGCTGATCTCCTTGATCTGAAGGAATCCAAAGGAAAGTATGCTCCCTTCTTGAGTGACATATGCAAATTCTATAGGGACTTTCATGTAAAATCTGACCGTGTCCATGGAATTTTCCTCCATGATCCTGTCAGTTTTGTGGCAGTTGTGCGTCCAGATCTTTTCACATACAAGAAGGGGGTAGTGAGGGTAGAGACACAAGGCATCTGTGTTGGGCACACACTTCTGGACCAAGGATTGAAAAAGTGGAATACGAGTAACCCATGGACGGGTTATTCTCCTGTTGCAGTTGCTTGGACTGTGAATGTCAAGGGAGTTCTTGATTATATCAGGGAGCTATTGATGAAACCCTGA >Glyma19g37830.3 sequence type=CDS gene model=Glyma19g37830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTCTCTATTCAACAATGCTAACGGCGTTCTCGGAAAATCCGAGAAGCTCATTATCGACACCGACCCTGGGATCGATGATAGCATGGCTATTTTTATGGCTTTTCAAAGTCCAGACGTGGAGGTTCTGGGTTTGACAACCATTTTTGGTAATACAACTACTGAAGTTTCCACACGCAATGCTTTGCTTTTGTGTGAGATCGCAGGCCGTGAAAATATTCCAGTTGCACAGGGAAGCCCTGAGCCGTTGAAGGGTGGAACGCCTCGTGTTGCTGATTTTGTTCATGGTAAAGATGGACTAGGGAACACATTCCTACCCCCACCTAAAGGTGAGAAAATTGAGAAGAGTGCTAGTGAGTTTTTGGTTGAGAAAGTCTCGGAATATCCCGGTGAAGTATCTGTGCTAGCACTTGGACCACTAACAAATGTTGCTTTGGCAATCAAACGAGATTCTGCGTTTGCAAGCAAAGTGAAGAGAATAGTTATTCTTGGTGGTGCATTCTTTGCCTTGGGGAATGTGAATCCTGCTGCAGAAGCAAATATCCATGGGGACCCGGAAGCCGCAGATATTGTGTTTACCTCTGGGGCAGATGTTGTTGTTGTTGGAATAAACATTACAACCCAAGTCCAATTCACAGATGCTGATCTCCTTGATCTGAAGGAATCCAAAGGAAAGTATGCTCCCTTCTTGAGTGACATATGCAAATTCTATAGGGACTTTCATGTAAAATCTGACCGTGTCCATGGAATTTTCCTCCATGATCCTGTCAGTTTTGTGGCAGTTGTGCGTCCAGATCTTTTCACATACAAGAAGGGGGTAGTGAGGGTAGAGACACAAGGCATCTGTGTTGGGCACACACTTCTGGACCAAGGATTGAAAAAGTGGAATACGAGTAACCCATGGACGGGTTATTCTCCTGTTGCAGTTGCTTGGACTGTGAATGTCAAGGGAGTTCTTGATTATATCAGGGAGCTATTGATGAAACCCTGA
>Glyma19g37830.1 sequence type=predicted peptide gene model=Glyma19g37830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLFNNANGVLGKSEKLIIDTDPGIDDSMAIFMAFQSPDVEVLGLTTIFGNTTTEVSTRNALLLCEIAGRENIPVAQGSPEPLKGGTPRVADFVHGKDGLGNTFLPPPKGEKIEKSASEFLVEKVSEYPGEVSVLALGPLTNVALAIKRDSAFASKVKRIVILGGAFFALGNVNPAAEANIHGDPEAADIVFTSGADVVVVGINITTQVQFTDADLLDLKESKGKYAPFLSDICKFYRDFHVKSDRVHGIFLHDPVSFVAVVRPDLFTYKKGVVRVETQGICVGHTLLDQGLKKWNTSNPWTGYSPVAVAWTVNVKGVLDYIRELLMKP* >Glyma19g37830.2 sequence type=predicted peptide gene model=Glyma19g37830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAIFMAFQSPDVEVLGLTTIFGNTTTEVSTRNALLLCEIAGRENIPVAQGSPEPLKGGTPRVADFVHGKDGLGNTFLPPPKGEKIEKSASEFLVEKVSEYPGEVSVLALGPLTNVALAIKRDSAFASKVKRIVILGGAFFALGNVNPAAEANIHGDPEAADIVFTSGADVVVVGINITTQVQFTDADLLDLKESKGKYAPFLSDICKFYRDFHVKSDRVHGIFLHDPVSFVAVVRPDLFTYKKGVVRVETQGICVGHTLLDQGLKKWNTSNPWTGYSPVAVAWTVNVKGVLDYIRELLMKP* >Glyma19g37830.3 sequence type=predicted peptide gene model=Glyma19g37830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLFNNANGVLGKSEKLIIDTDPGIDDSMAIFMAFQSPDVEVLGLTTIFGNTTTEVSTRNALLLCEIAGRENIPVAQGSPEPLKGGTPRVADFVHGKDGLGNTFLPPPKGEKIEKSASEFLVEKVSEYPGEVSVLALGPLTNVALAIKRDSAFASKVKRIVILGGAFFALGNVNPAAEANIHGDPEAADIVFTSGADVVVVGINITTQVQFTDADLLDLKESKGKYAPFLSDICKFYRDFHVKSDRVHGIFLHDPVSFVAVVRPDLFTYKKGVVRVETQGICVGHTLLDQGLKKWNTSNPWTGYSPVAVAWTVNVKGVLDYIRELLMKP*
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