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Report for Sequence Feature Glyma19g37810

Feature Type:gene_model
Chromosome:Gm19
Start:44914392
stop:44918101
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g37810
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03610AT Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:915650-918326 FORWARD LENGTH=359 SoyBaseE_val: 5.00E-127ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
PTHR22835Panther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN JGI ISS
PTHR22835:SF39Panther LATERAL SIGNALING TARGET PROTEIN 2 JGI ISS
PF00657PFAM GDSL-like Lipase/Acylhydrolase JGI ISS
UniRef100_G7L605UniRef Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=1 Tax=Medicago truncatula RepID=G7L605_MEDTR SoyBaseE_val: 1.00E-175ISS
UniRef100_I1JPZ9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPZ9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g37810
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g37810
ParalogEvidenceComments
Glyma03g35150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g37810 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g193500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g37810
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g37810
>Glyma19g37810.2   sequence type=CDS   gene model=Glyma19g37810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAACTCGCACAAACAACTCTTCCCCCTCTTCTCACTTTTCTTAGTTCTCTACCTCTTAGGACAAAGGGTAGTGCTGCAAGCTGAAGCAAGTCCTCAACATGGTCCAACAAAATTGTTCGTTTTCGGAGACTCGTATGCTGACACAGGAAACATTCAGAGAACTGTCTCAAATTCATGGAAGGACCCTTATGGCATCACCTTTCCCGGCAAGCCCGCCGGTCGTTTCTCCGACGGAAGAGTCCTAACCGATTACATCGCTAAGTATTTGAAAGTGAAATCACCAATCCCCTACAGATTGAGGAAACTGATGCCACAACATCTGAAATATGGGATGAACTTTGCGTTTGGGGGCACTGGTGTCTTTAACACTTTCGTTCCACTCCCAAACATGACAACACAGATTGATTTCTTGGAGCAACTCATCAAAGACAAAGTGTACACTACCTTAGATCTCACCAACTCGGTGGCCCTTGTCTCTGTCGCTGGAAATGACTACGGTCGTTACATGCTAACAAATGGCTCCCAGGGTTTACCATCTTTCGTGGCCTCAGTTGTTAATCAAACAAGAAGCAATCTTATTCGCATCAAAGGGTTGGGGGTGAAGAAAATAGTGGTGGGTGCTCTACAACCCCTTGGATGCCTTCCCCAGGAGACAGCCACAAGCTCGTTCCAACGTTGCAACGCCACCTCCAACGCCCTCGTGCTTCTCCACAACAGCCTCCTGAACCAAGCAGTGACCAAGTTGAACCAATTAGAGACCACCAAGGACCGTTATTCCACCTTCGTAATCCTCAACCTTTTCGACAGCTTCATGTCGGTGTTGAACCACCCTTCCACCCACAACATTCGGAACAAGTTGACGCCGTGCTGCGTTGGCGTAAGCAGTGGGTACTCGTGTGGGAGCGTGGACAAGAACAATGTGAAGAAATATAGGGTTTGTGATGACCCCAAATCTGCTTTCTTTTGGGATCTTGTGCACCCTACGCAGGCTGGATGGCATGCAGTGTATAACAAGTTGCGAACCATGAACGCTCTTCAACACATTCTTTACTAG
Predicted protein sequences of Glyma19g37810
>Glyma19g37810.2   sequence type=predicted peptide   gene model=Glyma19g37810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMNSHKQLFPLFSLFLVLYLLGQRVVLQAEASPQHGPTKLFVFGDSYADTGNIQRTVSNSWKDPYGITFPGKPAGRFSDGRVLTDYIAKYLKVKSPIPYRLRKLMPQHLKYGMNFAFGGTGVFNTFVPLPNMTTQIDFLEQLIKDKVYTTLDLTNSVALVSVAGNDYGRYMLTNGSQGLPSFVASVVNQTRSNLIRIKGLGVKKIVVGALQPLGCLPQETATSSFQRCNATSNALVLLHNSLLNQAVTKLNQLETTKDRYSTFVILNLFDSFMSVLNHPSTHNIRNKLTPCCVGVSSGYSCGSVDKNNVKKYRVCDDPKSAFFWDLVHPTQAGWHAVYNKLRTMNALQHILY*






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