Glyma19g37790 - SoyBase

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Report for Sequence Feature Glyma19g37790

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44900078
stop:	44903532
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g37790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52870	AT	Annotation by Michelle Graham. TAIR10: IQ calmodulin-binding motif family protein \| chr3:19593365-19595686 REVERSE LENGTH=456	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
UniRef100_B9T5N0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9T5N0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E176	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E176 related cluster n=1 Tax=unknown RepID=UPI000233E176	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g37790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g37790

Paralog	Evidence	Comments
Glyma03g35090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g37790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g193300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g37790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g37790

Limit To All Plant Sequences

>Glyma19g37790.3   sequence type=transcript   gene model=Glyma19g37790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTGATAACCCCACAACATTTAAGAGAAAAAAGCACATAATAGAGGGATTTGAATGGCTATGAAATGAAGTGTCCCTTTGTCCAGCTTGAAGAACATCATGTCCAGTGAGTGGAGGTGCACTCCTTTTATTGCGATCACTCTCACACACTAATTGAATAATTAGCTAACTACTGTGATAAAGATATAAATGTCACCTACTAGCTATAGTCATTTATTTTTGTCCATGGAAGTTCAAACTCACTCCCTCTCCCCCACCTTTCATTTCCACCTTCTCTCCCAATCCACCACCGACACCAACCAACCTTCTCTCGGCCATGCCACCGCCGCCCTCAAGCTGCAAAAGGTCTACCGGAGTTACCGTACCCGCCGCAGGTTGGCCGACTCCGCCGTTGTCGCCGAGGAGCTATGGTGGCAAGCCATAGACTATGTAAGACTAAACCACAGCACCATCTCGTTCTTTAATTTGCCGGAAACTGCTGCGTCACGCTGGAGTCGGGTTAAATTGAACGCTGCCAAGGTGGGTAAAGGTTTGTCCAAGGACGCCAAAGCACAAAAGTTGGCTTTCCAGCATTGGATAGAAGCTATTGATCCCAGACATCGCTATGGGCATAACTTGCAATACTACTACAAAGAATGGTGTAAAACAGATGCTGGCCAGCCGTTTTTTTATTGGTTGGATTTAGGAAATGGGAAGAATCTTGATCTTGAACAATGCTCTCGATCAAAGCTTCAAAAACAATGCATCAAGTATCTGGGACCTCAAGAGAGAGAACAGTTTGAATACACTGTACGCGCGGGTAAAATTATCAACAAGCAATATGGAGATTTACTTCATACAAATGAAGACTCTGAAGATGCAAAATGGATATTTGTAATGAGCACCTCTAAGAAACTTTATGCTGGCAAGAAAAAGAAGGGATTATTTCATCATTCTAGTTTTTTGGCTGGAGGAGCTACATTAGCTGCTGGAAGGCTGGTGGCCGAGAATGGAATTCTTAAGTCCATCTCTGCTTATAGTGGACACTACCGGCCAACAGATGACACTCTTGACGGTTTCTTATCATATCTCAAGGAAAATGGTGTCAAGCTTGATGAAGTTGAGTTGCACAAGGCAAATGAAGACTCTGATATGTATGAGGACAACAATCTTAGTAGAGCAGCAACATCTGAAGTGTCAAACGATGCTAAAATGTGGTCTTCAGAGTCCGAGAGCTGTGGTGCCCAAGACTGCAATATTGCAAAGAATCAATTCCAAGAAGGCTTCGAAGTCTTACCAATTAGGACACCAACTTTCGCTTAAATGGTCAACAGGAGCTGGACCTAGAATTGGGTGTGTTGCTGATTACCCTATAGAGCTTAGAACACAGGCCTTGGAGATGCTTAACCTTTCTCCCAAATTTCCCCCTACCCCTTCTTCATACGTGCGAATTGGTGGCCTTGTATTGCCTTCACCTTATCCATCCCCTAGTAACATTGATGGGACTTTGTGTTAATTGATTTATATGTAATGAACTCAGGTAAATGTTTATGTTTTTTTTTATGGTAAATGTTAATTTGTTAGTTTTGATAGAAATATCAATTGGAGATTTAAACTATGATCTTTTTTTTCCTCTCTTCTCCTTTTA

Coding sequences of Glyma19g37790

Limit To All Plant Sequences

>Glyma19g37790.2   sequence type=CDS   gene model=Glyma19g37790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACCTACTAGCTATAGTCATTTATTTTTGTCCATGGAAGTTCAAACTCACTCCCTCTCCCCCACCTTTCATTTCCACCTTCTCTCCCAATCCACCACCGACACCAACCAACCTTCTCTCGGCCATGCCACCGCCGCCCTCAAGCTGCAAAAGGTCTACCGGAGTTACCGTACCCGCCGCAGGTTGGCCGACTCCGCCGTTGTCGCCGAGGAGCTATGGTGGCAAGCCATAGACTATGTAAGACTAAACCACAGCACCATCTCGTTCTTTAATTTGCCGGAAACTGCTGCGTCACGCTGGAGTCGGGTTAAATTGAACGCTGCCAAGGTGGGTAAAGGTTTGTCCAAGGACGCCAAAGCACAAAAGTTGGCTTTCCAGCATTGGATAGAAGCTATTGATCCCAGACATCGCTATGGGCATAACTTGCAATACTACTACAAAGAATGGTGTAAAACAGATGCTGGCCAGCCGTTTTTTTATTGGTTGGATTTAGGAAATGGGAAGAATCTTGATCTTGAACAATGCTCTCGATCAAAGCTTCAAAAACAATGCATCAAGTATCTGGGACCTCAAGAGAGAGAACAGTTTGAATACACTGTACGCGCGGGTAAAATTATCAACAAGCAATATGGAGATTTACTTCATACAAATGAAGACTCTGAAGATGCAAAATGGATATTTGTAATGAGCACCTCTAAGAAACTTTATGCTGGCAAGAAAAAGAAGGGATTATTTCATCATTCTAGTTTTTTGGCTGGAGGAGCTACATTAGCTGCTGGAAGGCTGGTGGCCGAGAATGGAATTCTTAAGTCCATCTCTGCTTATAGTGGACACTACCGGCCAACAGATGACACTCTTGACGGTTTCTTATCATATCTCAAGGAAAATGGTGTCAAGCTTGATGAAGTTGAGTTGCACAAGGCAAATGAAGACTCTGATATGTATGAGGACAACAATCTTAGTAGAGCAGCAACATCTGAAGTGTCAAACGATGCTAAAATGTATGTGCCTGAAATATCTGAGGGAGCTTCCAATACTTCATCCTCAGTTGAGGAGGATCCTCTACCTGAATCTGTTACTTATACAAGGACTTTATCAGGTGGTCTTCAGAGTCCGAGAGCTGTGGTGCCCAAGACTGCAATATTGCAAAGAATCAATTCCAAGAAGGCTTCGAAGTCTTACCAATTAGGACACCAACTTTCGCTTAAATGGTCAACAGGAGCTGGACCTAGAATTGGGTGTGTTGCTGATTACCCTATAGAGCTTAGAACACAGGCCTTGGAGATGCTTAACCTTTCTCCCAAATTTCCCCCTACCCCTTCTTCATACGTGCGAATTGGTGGCCTTGTATTGCCTTCACCTTATCCATCCCCTAGTAACATTGATGGGACTTTGTGTTAA

>Glyma19g37790.3   sequence type=CDS   gene model=Glyma19g37790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCACCTACTAGCTATAGTCATTTATTTTTGTCCATGGAAGTTCAAACTCACTCCCTCTCCCCCACCTTTCATTTCCACCTTCTCTCCCAATCCACCACCGACACCAACCAACCTTCTCTCGGCCATGCCACCGCCGCCCTCAAGCTGCAAAAGGTCTACCGGAGTTACCGTACCCGCCGCAGGTTGGCCGACTCCGCCGTTGTCGCCGAGGAGCTATGGTGGCAAGCCATAGACTATGTAAGACTAAACCACAGCACCATCTCGTTCTTTAATTTGCCGGAAACTGCTGCGTCACGCTGGAGTCGGGTTAAATTGAACGCTGCCAAGGTGGGTAAAGGTTTGTCCAAGGACGCCAAAGCACAAAAGTTGGCTTTCCAGCATTGGATAGAAGCTATTGATCCCAGACATCGCTATGGGCATAACTTGCAATACTACTACAAAGAATGGTGTAAAACAGATGCTGGCCAGCCGTTTTTTTATTGGTTGGATTTAGGAAATGGGAAGAATCTTGATCTTGAACAATGCTCTCGATCAAAGCTTCAAAAACAATGCATCAAGTATCTGGGACCTCAAGAGAGAGAACAGTTTGAATACACTGTACGCGCGGGTAAAATTATCAACAAGCAATATGGAGATTTACTTCATACAAATGAAGACTCTGAAGATGCAAAATGGATATTTGTAATGAGCACCTCTAAGAAACTTTATGCTGGCAAGAAAAAGAAGGGATTATTTCATCATTCTAGTTTTTTGGCTGGAGGAGCTACATTAGCTGCTGGAAGGCTGGTGGCCGAGAATGGAATTCTTAAGTCCATCTCTGCTTATAGTGGACACTACCGGCCAACAGATGACACTCTTGACGGTTTCTTATCATATCTCAAGGAAAATGGTGTCAAGCTTGATGAAGTTGAGTTGCACAAGGCAAATGAAGACTCTGATATGTATGAGGACAACAATCTTAGTAGAGCAGCAACATCTGAAGTGTCAAACGATGCTAAAATGTGGTCTTCAGAGTCCGAGAGCTGTGGTGCCCAAGACTGCAATATTGCAAAGAATCAATTCCAAGAAGGCTTCGAAGTCTTACCAATTAGGACACCAACTTTCGCTTAA

Predicted protein sequences of Glyma19g37790

Limit To All Plant Sequences

>Glyma19g37790.2   sequence type=predicted peptide   gene model=Glyma19g37790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPTSYSHLFLSMEVQTHSLSPTFHFHLLSQSTTDTNQPSLGHATAALKLQKVYRSYRTRRRLADSAVVAEELWWQAIDYVRLNHSTISFFNLPETAASRWSRVKLNAAKVGKGLSKDAKAQKLAFQHWIEAIDPRHRYGHNLQYYYKEWCKTDAGQPFFYWLDLGNGKNLDLEQCSRSKLQKQCIKYLGPQEREQFEYTVRAGKIINKQYGDLLHTNEDSEDAKWIFVMSTSKKLYAGKKKKGLFHHSSFLAGGATLAAGRLVAENGILKSISAYSGHYRPTDDTLDGFLSYLKENGVKLDEVELHKANEDSDMYEDNNLSRAATSEVSNDAKMYVPEISEGASNTSSSVEEDPLPESVTYTRTLSGGLQSPRAVVPKTAILQRINSKKASKSYQLGHQLSLKWSTGAGPRIGCVADYPIELRTQALEMLNLSPKFPPTPSSYVRIGGLVLPSPYPSPSNIDGTLC*

>Glyma19g37790.3   sequence type=predicted peptide   gene model=Glyma19g37790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPTSYSHLFLSMEVQTHSLSPTFHFHLLSQSTTDTNQPSLGHATAALKLQKVYRSYRTRRRLADSAVVAEELWWQAIDYVRLNHSTISFFNLPETAASRWSRVKLNAAKVGKGLSKDAKAQKLAFQHWIEAIDPRHRYGHNLQYYYKEWCKTDAGQPFFYWLDLGNGKNLDLEQCSRSKLQKQCIKYLGPQEREQFEYTVRAGKIINKQYGDLLHTNEDSEDAKWIFVMSTSKKLYAGKKKKGLFHHSSFLAGGATLAAGRLVAENGILKSISAYSGHYRPTDDTLDGFLSYLKENGVKLDEVELHKANEDSDMYEDNNLSRAATSEVSNDAKMWSSESESCGAQDCNIAKNQFQEGFEVLPIRTPTFA*

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