SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G44590 | AT | Annotation by Michelle Graham. TAIR10: 60S acidic ribosomal protein family | chr3:16163983-16164658 FORWARD LENGTH=111 | SoyBase | E_val: 3.00E-30 | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational elongation | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG3449 | KOG | 60S acidic ribosomal protein P2 | JGI | ISS | |
| PTHR21141 | Panther | 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER | JGI | ISS | |
| PF00428 | PFAM | 60s Acidic ribosomal protein | JGI | ISS | |
| UniRef100_A8QJ72 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 60S acidic ribosomal protein P2 n=1 Tax=Juglans regia RepID=A8QJ72_9ROSI | SoyBase | E_val: 4.00E-31 | ISS |
| UniRef100_I1NAL2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NAL2_SOYBN | SoyBase | E_val: 2.00E-84 | ISS |
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Glyma19g37780 not represented in the dataset |
Glyma19g37780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g35080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g193200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g37780.2 sequence type=transcript gene model=Glyma19g37780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCAATACATGGCCCATGGGTAAAAAATCAAAACCCTAGAACCCGATTATTGAGCCGAAGGGAGCCCTAAACCCTATTTATGAAATCACAGAATACATAACCTATATTCCTTCACCTTCACTTCACTCTCAGATCGCTCTTTCTGTCACACACTCACATTCCGGTGCAAAATGAAGGTCATCGCCGCCTACTTGCTCGCCGTATTGGGAGGCAATGCAGCCCCTTCCGCTGATGACTTAAGGACCATCCTTGGCTCCGTTGGAGCTGACGCGAATGATGACAACATCAGCAACTTCTTGTCTGAAGTTAAGGGCAAAGACATTGCGGAGCTTATCGCCGCCGGTAGGGAAAAGTTGGCCTCCGTGCCTTCTGGCGGTGGCGCCGCGGTTTCCGTGGCCGCTGCTCCCGGTGGTGGCGCTGCTGCACCGGCTGCCGCCGAATCTAAGAAGGAGGAAAAGGTGGAAGAGAAGGAGGAATCGGATGACGATATGGGATTCAGTCTCTTTGATTAATTGGTAGGGTTTTCAACCTTTTTTCGGAACATATTGTTGATTTAGAGGTCCTTAGTTTGTCTTTTTTATTTTTGAGTAAAGTAGTACTATTCGTAGCCAATGAATTGTGTGATTGAAAGATTTCGGTTTAATATTGATTACTTTCGTGATGTTGTTGAACTTTCTTCCGTGATTTACTGTTATATATCTATCCTTCATTTAGTTTTTCGTCGATGGATGTTTCTTTTATTGTAATTCAGTGTGTCTAGCCACCGGAATTAATAGAGGTTATATACTATTAAAATTTGCGATCAAGGTTTTTTAGTGTTGTGAATAATGATATTGAAGTCTGAAGAGTGCTTGAAAATTGCAATAGATTTGTGCTGTTATCGGTTAAACAAATCTTGTGTTCGAAAAAAGGGACCAGGAAATCTTTCTCCCTCTATATAGGAAACAATGGTTATTTACCTTTACTGGTATTATTCTCTTTCAACTTTTGCAATAGCCTTGTTCTCCATAGGAATTCTACTGTCTAAAAATGCCCCAACAACTTTCCCTGTCTTTAATCCTATATGTTCCAGACTTGGGACGTCACCTAAGAATTTCCAAGACGCATCAAAATGCATGAGAATTGAAGTGTACTAGTTAATCATACTCAACTAGAGGAGAGGCTTTGATCTACTGTTTTCCCATCCTCAGTTGCCTTGGTCACCTTATATGAATCAAACATTTACACAATGAGTAACAACTTCAGCAAGTATGAAACTAGAGAAGAGGCTTTCATTAGGAAGAGCATGAAAAAATAAATGAGTATAGTGTGTTTAGAAGTATGTTTGAATACAGAAGGCTATGTTAAATGAATATAAATTGCAGAAGCTAAACTGGGTAGAATTCATGCTTAATCTGCCTCTAGACGTGTGAGCAAACATGCATCAAGTAGCTTGAGAAATCTGGAGTAAACAAATGTAACCTGTTCTGCAGTTTTATCAATGTGTTTCACGTTCAGTTCGTCTCAGATCACCTTAGTTTTGATGGAAAAGTAGCAAGTAGTAACATCACTTGCAGCATGCTTGTTTGAAAGAAACAGTATGAATCCATGACTAGTGTCATGCCAATTACGGTTGAAAATTTATCATTTTTGGGATAATGTTTAGACTCACAGTTTGAACATGGCTGTGATAGTCCTTCCTTCAATGTCAACAGCTACGATATCAGCTTGCAGGACCCAGCTGTCCTTTAACATGACTTCCTTTACCTGAATGATCGATGGAAAGCATGCTAAGTTTTATTGCAGTACTTCAAATGCAATATCGTCAATAGTTTTAGAGGCAACCATGCCTCTTCGTGGTGCCTGTTGTAGCAGGGGATCTTAAGTGAGGACCTGTTAATACTTTGACGGGTGTTGTGGGGATTTAATTAGCTTTATGTTTTCTGGTGTTGATTTATGTTTGGTCTGTATGTTCTTGTGTGGGATGGTTTCGGTAGTGCCTTAGGCGACGTGGTGCCTAATGGTATCTGTTTTTCTGCTGATGTACTGACACTATGTTTTTGTCTAGTTGGGAAATTACTTATGACCCAAATCACCCAATTAGCATTATGAATATATATGTTGCTTATAAAAAAAAGCGCCTTAGCAAATCCAACAGCTATTACTAATTTTGAATACATGTTTGTGTTTGCATGGTATCCCGGTACCCCTCATAGAAAGTAGTTAAGAGCAACTTTATAGTTCAAGATCTGATCTTGTGTGGATCTTGCAATAAAGGGGAATAGAGATCTCTGAGGTGGAGAATGGATTCTTCTACAAGAAACCTGAAGAGCTTGAAAAAAAATTAAAAAAAACTTCAAAACAGAAACCCACAAGAAGAAGGTTGTTGAAGAAAAACAAACCAACAGAAGAGGCAAAGAACAAAATAAAGATGGACTTACCTGGAGGTCACTGAGGTGGCTGTGGACTGTCATGGAGGGCGAAGGAGGAAAAAGGGGGAGGTCGCAGAGGGGAGGAAGGAAGAAAGAAAGAAGAGGAGGAAGGAGAGAGGGAGGAGAACAAATCACGAAGGAAGAAGCGTGAACGGTCGGAAAAAAAATGCATAATATCGGTCTGAAAATTTATACACTATAAATTGAATCAAATAGTAGAGATTTGTATACCTAATTTTCATTTTCAT
>Glyma19g37780.1 sequence type=CDS gene model=Glyma19g37780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCACTCTCAGATCGCTCTTTCTGTCACACACTCACATTCCGGTGCAAAATGAAGGTCATCGCCGCCTACTTGCTCGCCGTATTGGGAGGCAATGCAGCCCCTTCCGCTGATGACTTAAGGACCATCCTTGGCTCCGTTGGAGCTGACGCGAATGATGACAACATCAGCAACTTCTTGTCTGAAGTTAAGGGCAAAGACATTGCGGAGCTTATCGCCGCCGGTAGGGAAAAGTTGGCCTCCGTGCCTTCTGGCGGTGGCGCCGCGGTTTCCGTGGCCGCTGCTCCCGGTGGTGGCGCTGCTGCACCGGCTGCCGCCGAATCTAAGAAGGAGGAAAAGGTGGAAGAGAAGGAGGAATCGGATGACGATATGGGATTCAGTCTCTTTGATTAA >Glyma19g37780.2 sequence type=CDS gene model=Glyma19g37780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGTCATCGCCGCCTACTTGCTCGCCGTATTGGGAGGCAATGCAGCCCCTTCCGCTGATGACTTAAGGACCATCCTTGGCTCCGTTGGAGCTGACGCGAATGATGACAACATCAGCAACTTCTTGTCTGAAGTTAAGGGCAAAGACATTGCGGAGCTTATCGCCGCCGGTAGGGAAAAGTTGGCCTCCGTGCCTTCTGGCGGTGGCGCCGCGGTTTCCGTGGCCGCTGCTCCCGGTGGTGGCGCTGCTGCACCGGCTGCCGCCGAATCTAAGAAGGAGGAAAAGGTGGAAGAGAAGGAGGAATCGGATGACGATATGGGATTCAGTCTCTTTGATTAA
>Glyma19g37780.1 sequence type=predicted peptide gene model=Glyma19g37780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high SLSDRSFCHTLTFRCKMKVIAAYLLAVLGGNAAPSADDLRTILGSVGADANDDNISNFLSEVKGKDIAELIAAGREKLASVPSGGGAAVSVAAAPGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD* >Glyma19g37780.2 sequence type=predicted peptide gene model=Glyma19g37780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKVIAAYLLAVLGGNAAPSADDLRTILGSVGADANDDNISNFLSEVKGKDIAELIAAGREKLASVPSGGGAAVSVAAAPGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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