Glyma19g37680 - SoyBase

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Report for Sequence Feature Glyma19g37680

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44787149
stop:	44790798
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g37680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03670	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36420.1); Has 700 Blast hits to 624 proteins in 104 species: Archae - 0; Bacteria - 18; Metazoa - 333; Fungi - 60; Plants - 73; Viruses - 24; Other Eukaryotes - 192 (source: NCBI BLink). \| chr5:947311-949898 FORWARD LENGTH=516	SoyBase	E_val: 1.00E-91	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009888	GO-bp	Annotation by Michelle Graham. GO Biological Process: tissue development	SoyBase	N/A	ISS
GO:0030154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1NAK1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAK1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g37680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g37680

Paralog	Evidence	Comments
Glyma03g34990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g37680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g192500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g37680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g37680

Limit To All Plant Sequences

>Glyma19g37680.1   sequence type=CDS   gene model=Glyma19g37680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAGAGGTACTTGCACCAGCTACTTGAAGAGGATCAAGAGCCGTTCCTTCTAAACAAGTACATTTCCGATAGGCGAAGCCAAATGAAAAGGCCTTCCCCGATGACGAGTTTGCAAGTGAAGAAACGCAAATCAACCAATCCAAACGCAAACTTCCCGAGAAATCTCTGCAAAAGCGCTTGTCTTTTCTCCCTCACAGACACTCCAGACCTCAGAAAATCACCACTCTTCGAATTCGCTTCCCCAGTCAAAAGCCCTTACAAATCACCAAACCCTATTTTTCTTCACATCCCTTCTAGAACCGCTGCTCTGCTTCTAGAAGCCGCTCTCAGGATCCAGAAACACACTTCAAAGCCCAAAACAAAAGCCCAATCCTTCGGCCTCTTTGGGTCACTATACAAGAGACTCACTCAGCGGAGCCATAAAAGGCGAGAGATAGAGTGTGGTGGTGGTGGCGTTAAGGTCTCGGTGAAGGATGTTTTGAAGTGGGATTCCTCTGTGGGGCGAAGAAAAGCTTCTAAAGCCAACGGGAAATGCAAGGAAACAGGGAATGTGAATACGAATGCGAGTGAAGTGGGGTTTGCGTGTTCTTACAATATTGGTAGGCCTAGTAGTAGTGCTGTTTGGTCAGAGAGCAATGAAGATAAATCACTAGACATTGAAACCTCAAGTAGTGGCTACTCTGAAAAGATTCACTTCGTAACCAATATACACAAACACTACTCCACGTGCTTCTGCGAAAGCCCGTTCCGTTTTGTTCTTCAAACCAGCACCCCTTCCTCCGGCCACCACACGCCGGAGCTTCCCTCGCCGAGTCGCCACCCAACTGAGGAGAAAGAAAGTAATGAAGGTGAGAGTCTGAAGAAATTCGAATCAGGGGAAGAAGAGGAGGAAGATAAGGAACAGTGCAGTCCAGTGAGTGTGTTAGACCCACCATTCGAGGACGACGAAGAAGGGCATGGAAACGGTGATGAAGAAGAAGAGGAAGAGGAGGAGGGTGGTTTTGATTTGGAGTGCAGCTATGCGATTGTACAGAGAGCCAAGCAGCAGTTATTGTATAAGCTTCGTAGATTTGAGAAACTGGCGGAGTTGGATCCAGTGGAACTTGAGAAAAGAATGCAGGATCAAGAAGAGGACGAGGATGACACATTTATGGAAGAGGAAGATGGTCATGATGAGAAAAACCAAGCATCATGCAAAGAAAATGACTTTAGAAAACTAATTTTCCAAGCTCTGTGCCAGTCAAGTGTCCATGACAGACAGCAAATCCCAGAGGACTTTAAGAAGCTGGTTTCTGATCTCATTTTGGAAGAAGAGAGAGCACTTGATTCCTTAGAAGATAAGGACATGGTGATAAGCAGGATATGCAAGAGGCTGGAATTGTGGAAAGAAGTGGAGTCTAATACAATTGACATGATGATAGAAGATGACTTCGCTAGAGAGGATAGTGAGTGGAAGAGAAATATAGAGCATATAAGAAATATGGCTGGGGAGCTTGAGCTTGCTATCTTTGGCTTTCTGGTGGAGGAATTTTCAGAGGAACTAGTATGTTAA

Predicted protein sequences of Glyma19g37680

Limit To All Plant Sequences

>Glyma19g37680.1   sequence type=predicted peptide   gene model=Glyma19g37680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQRYLHQLLEEDQEPFLLNKYISDRRSQMKRPSPMTSLQVKKRKSTNPNANFPRNLCKSACLFSLTDTPDLRKSPLFEFASPVKSPYKSPNPIFLHIPSRTAALLLEAALRIQKHTSKPKTKAQSFGLFGSLYKRLTQRSHKRREIECGGGGVKVSVKDVLKWDSSVGRRKASKANGKCKETGNVNTNASEVGFACSYNIGRPSSSAVWSESNEDKSLDIETSSSGYSEKIHFVTNIHKHYSTCFCESPFRFVLQTSTPSSGHHTPELPSPSRHPTEEKESNEGESLKKFESGEEEEEDKEQCSPVSVLDPPFEDDEEGHGNGDEEEEEEEEGGFDLECSYAIVQRAKQQLLYKLRRFEKLAELDPVELEKRMQDQEEDEDDTFMEEEDGHDEKNQASCKENDFRKLIFQALCQSSVHDRQQIPEDFKKLVSDLILEEERALDSLEDKDMVISRICKRLELWKEVESNTIDMMIEDDFAREDSEWKRNIEHIRNMAGELELAIFGFLVEEFSEELVC*

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