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Report for Sequence Feature Glyma19g37561

Feature Type:gene_model
Chromosome:Gm19
Start:44663977
stop:44667067
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36490AT Annotation by Michelle Graham. TAIR10: demeter-like 1 | chr2:15308259-15314272 REVERSE LENGTH=1393 SoyBaseE_val: 9.00E-48ISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006284GO-bp Annotation by Michelle Graham. GO Biological Process: base-excision repair SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0031936GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of chromatin silencing SoyBaseN/AISS
GO:0080111GO-bp Annotation by Michelle Graham. GO Biological Process: DNA demethylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003906GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0019104GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA N-glycosylase activity SoyBaseN/AISS
PTHR10359Panther A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III JGI ISS
PTHR10359:SF3Panther A/G-SPECIFIC ADENINE GLYCOSYLASE JGI ISS
UniRef100_G7L4Z9UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA glycosylase n=1 Tax=Medicago truncatula RepID=G7L4Z9_MEDTR SoyBaseE_val: 1.00E-59ISS
UniRef100_I1JPX0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPX0_SOYBN SoyBaseE_val: 2.00E-62ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g37561 not represented in the dataset

Glyma19g37561 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma03g34860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g191300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g37561.1   sequence type=CDS   gene model=Glyma19g37561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTAGTTGTTGCTACATTCATTAACATAGTTGTGTTTGTTGATATATGTATAATTTTATTAATTTGTTGTGAACTACAGTGGAACAAGCGAGAACCTGATGATCTAGGCAAATACCTTCTAGCTATATGGACCCCAGGGGAGACAGCAGATTCTATACAGCCACCAGAAAGCAAATGCAGCTCTCAGGACTGTGACCAGCTCTGTAATGAGAAGGAATGTTTTTCATGCAACAGTTTCCGTGAAGCAAATACACAGATAGTTCGAGGGACACTCCTGATACCATGTCGAACAGCTATGAGAGGGAGCTTTCCGCTAAACGGCACCTATTTTCAAGTCAACGAGGTTTTTGCAGACAATGACTCAAGTCTTAATCCAATTAGTGTTCCCTGA

>Glyma19g37561.1   sequence type=predicted peptide   gene model=Glyma19g37561   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLVVATFINIVVFVDICIILLICCELQWNKREPDDLGKYLLAIWTPGETADSIQPPESKCSSQDCDQLCNEKECFSCNSFREANTQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADNDSSLNPISVP*







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