Glyma19g37520 - SoyBase

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Report for Sequence Feature Glyma19g37520

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44638190
stop:	44642992
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g37520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36530	AT	Annotation by Michelle Graham. TAIR10: Enolase \| chr2:15321081-15323786 REVERSE LENGTH=444	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0000015	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: phosphopyruvate hydratase complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005740	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial envelope	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0004634	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphopyruvate hydratase activity	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
KOG2670	KOG	Enolase	JGI		ISS
PTHR11902	Panther	ENOLASE	JGI		ISS
PF00113	PFAM	Enolase, C-terminal TIM barrel domain	JGI		ISS
PF03952	PFAM	Enolase, N-terminal domain	JGI		ISS
UniRef100_I1NAI7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAI7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6RIB7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Enolase n=1 Tax=Glycine max RepID=Q6RIB7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g37520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g37520

Paralog	Evidence	Comments
Glyma03g34830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g37520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g190900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g37520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g37520

Limit To All Plant Sequences

>Glyma19g37520.1   sequence type=CDS   gene model=Glyma19g37520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCATCGTTAGCATCAAGGCCCGCCAGATCTTCGACAGTCGTGGCAATCCAACTGTCGAGGTGGATTTGACTTGCTCCGATGGTACTTTTGCCAGAGCTGCTGTTCCAAGTGGTGCATCCACTGGGATTTATGAGGCCCTTGAATTGAGAGATGGAGGATCTGACTACCTTGGAAAGGGTGTATCAAAGGCTGTTGACAATGTGAACACCGTCATTGGCCCTGCTTTGATTGGCAAGGACCCAACTGAGCAGACTGCTATTGACAACTTAATGGTTCAACAGCTTGATGGAACTGTTAACGAATGGGGTTGGTGCAAGCAAAAGCTAGGAGCAAATGCCATATTGGCAGTGTCTCTTGCAGTCTGCAAAGCTGGTGCTAGCGTCCTGAAAATTCCTCTTTACAAGCATATTGCTAATATCGCGGGTAACAAAAAGTTGGTTTTGCCTGTTCCTGCTTTCAATGTCATTAATGGTGGATCACATGCTGGAAACAAACTTGCTATGCAGGAGTTTATGGTTCTTCCTGTGGGAGCTTCCTCGTTCAAGGAAGCCATGAAGATGGGTGTAGAAGTGTATCACAATTTGAAGTCTGTGATTAAGAAGAAATATGGTCAAGATGCAATAAATGTTGGTGACGAAGGTGGCTTTGCCCCTAACATCCAGGAAAACAAGGAAGGCTTGGAATTGCTGAAAACTGCCATCGCCAAAGCTGGTTACACAGGCAAAGTTGTCATTGGAATGGATGTTGCAGCTTCTGAATTCTACAAGGAAGACAAAACATACGATTTGAACTTCAAGGAAGATAACAATGATGGCTCCCAGAGGATCTCTGGAGATGCTTTGAAAGATCTGTACAAGTCATTTGTGTCAGAGTACCCAATTGTTTCAATTGAGGATCCATTTGACCAGGATGACTGGGAGCACTATGCTAAGCTAACTGCTGAGGTTGGAGCCAATGTACAAATTGTTGGTGATGATCTCTTGGTTACCAACCCCAAGAGGGTTCAGAAGGCAATTGATACTAAAGCATGCAATGCTCTTCTCCTCAAGGTCAACCAAATTGGTTCTGTGACTGAGAGTATTGAAGCTGTCAGGATGTCCAAAAAAGCTGGATGGGGTGTCATGGCCAGTCACAGAAGTGGAGAGACTGAGGATACCTTCATTGCTGACCTTTCTGTTGGTTTGGCTACGGGTCAAATTAAGACTGGAGCTCCATGCAGGTCTGAGCGTCTTGCTAAATATAACCAGCTCTTGAGAATTGAGGAGGAGCTTGGTGCTGAAGCAGTGTACGCCGGAGCTAACTTCCGTACCCCCGTTGAACCCTACTAA

Predicted protein sequences of Glyma19g37520

Limit To All Plant Sequences

>Glyma19g37520.1   sequence type=predicted peptide   gene model=Glyma19g37520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATIVSIKARQIFDSRGNPTVEVDLTCSDGTFARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVDNVNTVIGPALIGKDPTEQTAIDNLMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGASVLKIPLYKHIANIAGNKKLVLPVPAFNVINGGSHAGNKLAMQEFMVLPVGASSFKEAMKMGVEVYHNLKSVIKKKYGQDAINVGDEGGFAPNIQENKEGLELLKTAIAKAGYTGKVVIGMDVAASEFYKEDKTYDLNFKEDNNDGSQRISGDALKDLYKSFVSEYPIVSIEDPFDQDDWEHYAKLTAEVGANVQIVGDDLLVTNPKRVQKAIDTKACNALLLKVNQIGSVTESIEAVRMSKKAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAEAVYAGANFRTPVEPY*

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