Glyma19g37500 - SoyBase

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Report for Sequence Feature Glyma19g37500

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44625895
stop:	44627421
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g37500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52960	AT	Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein \| chr3:19639699-19640403 FORWARD LENGTH=234	SoyBase	E_val: 2.00E-94	ISS
GO:0018119	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-cysteine S-nitrosylation	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016209	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antioxidant activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0541	KOG	Alkyl hydroperoxide reductase/peroxiredoxin	JGI		ISS
PTHR10430	Panther	PEROXIREDOXIN-5	JGI		ISS
PF08534	PFAM	Redoxin	JGI		ISS
UniRef100_G1JT87	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Type II peroxiredoxin E n=1 Tax=Vitis vinifera RepID=G1JT87_VITVI	SoyBase	E_val: 5.00E-105	ISS
UniRef100_I1NAI6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAI6_SOYBN	SoyBase	E_val: 1.00E-151	ISS

Expression Patterns of Glyma19g37500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g37500

Paralog	Evidence	Comments
Glyma03g34821	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g37500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g190800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g37500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g37500

Limit To All Plant Sequences

>Glyma19g37500.4   sequence type=transcript   gene model=Glyma19g37500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCGAGATTCAAATCTGACATAATATTTTGTCATATATATTAAGATTTTTTTAGTAATTGTTTAAAATTTACAATGTAATGTAATTTTTAATTAAGTGGCGGTGTACTCACATTGTTTGATAATTAATCATTTTCCCCCACATATTTCGTTAATTATGATGCGATTATTGTTTTTTAAAGTAGTGATACAAAAAAATGTGTTACTAGCAAGTACTAGGGTGCGACTTGGCACAAAAAGAAGCACCCATAGTTTTGGGCTAACACGTGAGGCCTCCCCATACTCTTCATTCTTCACTCTTCACTCTTCACTCCCAACCCTAGCCAAACGCAAACCATTCATTCATTCAGTTCAGTAACTCACCTCACCATGGCCGCATCCATTACATTGTCCAGGCTCGTCTCTTCCACCCTCACCACTGCCTCTTTCTTCCCACCCATAACCCTGCCTTCCAAACTCTCCTCTCTCCGACTCCCCACCCGCCGCCACCCCAAGCCACTCAGATTCTCCTCCTCCACCATCACCGCCACCATCTCCGTCGGCGACAAGCTCCCGGAGGCCACCTTCTCCTACCTGGACTCGTCCGGCGAGGTGCAGACGACGACGGTGTCGGAACTGACGAAGGGGAAGAAGGCGGTGCTGTTCGCGGTCCCCGGCGCTTTCACCCCCACGTGCTCGCAGAAGCACGTGCCGGGCTTCGTGGAGAAATCGGGGGAGCTGAGGGCGAAGGGGATCGACACAATCGCATGCATTTCGGTCAACGACGCCTTCGTCATGAAGGCATGGAAGGAGGACCTCAAGGTCAACGAGGAAGTCCTCCTGTTATCTGACGGTAACGGAACCTTCACCAAAGCCATTGGGGTCGAACTTGATCTCAGCGACAAGCCCGTTGGTTTGGGCGTTAGGTCTAGGCGTTACGCGCTTTTGGCCGAGGATGGGGTTGTCAAGCTCTTCAATTTGGAGGAAGGGGGTGCCTTCACTTTCAGCGGCGCTCAGGACATCCTTGATGTTCTTTGAATTATTCTTCCTCTTTCGTTTATTCCACACTCCAGTTACTACTCTTTTCAATCCGGTTAGGGTTTCTTTCCTCTCATAATAACGTGGATGGATTAATTGGACCTCAGTGCTGTTACTGTTACCTGTGCCTATAATAATGAAACTCATGTGCTGGTGTTGAGCTTTTGTGGCCATTTGTTTGGCATTTTCAGGACCTTGTGTAAAGTTTATCAATTTTGGACTTCCTAGATCCTCTTCTGTTGGACAGGTAGGATTTACTCTGCAGTGACGCCTTTAATGATCGTTATGCTTTGACTTGTCTGATGTGTTTTAATCAATATGTTTTTCACTTGGTTGATTGAACAAAAAGTAACTTCTAAGATACGATTCCTCCTGATTTTAAAAAAAGTAACCTCATCCTCGAGATCACAATGTTCCTTTTCTATAAAAACATTCTCTGGTAAAGTAGATCACTTTTCAAAAACCTTCTAACTTGTGTATTCCTAGGTAGTTTCAATTAAGTTAAATAATGA

Coding sequences of Glyma19g37500

Limit To All Plant Sequences

>Glyma19g37500.3   sequence type=CDS   gene model=Glyma19g37500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCATCCATTACATTGTCCAGGCTCGTCTCTTCCACCCTCACCACTGCCTCTTTCTTCCCACCCATAACCCTGCCTTCCAAACTCTCCTCTCTCCGACTCCCCACCCGCCGCCACCCCAAGCCACTCAGATTCTCCTCCTCCACCATCACCGCCACCATCTCCGTCGGCGACAAGCTCCCGGAGGCCACCTTCTCCTACCTGGACTCGTCCGGCGAGGTGCAGACGACGACGGTGTCGGAACTGACGAAGGGGAAGAAGGCGGTGCTGTTCGCGGTCCCCGGCGCTTTCACCCCCACGTGCTCGCAGAAGCACGTGCCGGGCTTCGTGGAGAAATCGGGGGAGCTGAGGGCGAAGGGGATCGACACAATCGCATGCATTTCGGTCAACGACGCCTTCGTCATGAAGGCATGGAAGGAGGACCTCAAGGTCAACGAGGAAGTCCTCCTGTTATCTGACGGTAACGGAACCTTCACCAAAGCCATTGGGGTCGAACTTGATCTCAGCGACAAGCCCGTTGGTTTGGGCGTTAGGTCTAGGCGTTACGCGCTTTTGGCCGAGGATGGGGTTGTCAAGCTCTTCAATTTGGAGGAAGGGGGTGCCTTCACTTTCAGCGGCGCTCAGGACATCCTTGATGTTCTTTGA

>Glyma19g37500.4   sequence type=CDS   gene model=Glyma19g37500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCATCCATTACATTGTCCAGGCTCGTCTCTTCCACCCTCACCACTGCCTCTTTCTTCCCACCCATAACCCTGCCTTCCAAACTCTCCTCTCTCCGACTCCCCACCCGCCGCCACCCCAAGCCACTCAGATTCTCCTCCTCCACCATCACCGCCACCATCTCCGTCGGCGACAAGCTCCCGGAGGCCACCTTCTCCTACCTGGACTCGTCCGGCGAGGTGCAGACGACGACGGTGTCGGAACTGACGAAGGGGAAGAAGGCGGTGCTGTTCGCGGTCCCCGGCGCTTTCACCCCCACGTGCTCGCAGAAGCACGTGCCGGGCTTCGTGGAGAAATCGGGGGAGCTGAGGGCGAAGGGGATCGACACAATCGCATGCATTTCGGTCAACGACGCCTTCGTCATGAAGGCATGGAAGGAGGACCTCAAGGTCAACGAGGAAGTCCTCCTGTTATCTGACGGTAACGGAACCTTCACCAAAGCCATTGGGGTCGAACTTGATCTCAGCGACAAGCCCGTTGGTTTGGGCGTTAGGTCTAGGCGTTACGCGCTTTTGGCCGAGGATGGGGTTGTCAAGCTCTTCAATTTGGAGGAAGGGGGTGCCTTCACTTTCAGCGGCGCTCAGGACATCCTTGATGTTCTTTGA

Predicted protein sequences of Glyma19g37500

Limit To All Plant Sequences

>Glyma19g37500.3   sequence type=predicted peptide   gene model=Glyma19g37500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASITLSRLVSSTLTTASFFPPITLPSKLSSLRLPTRRHPKPLRFSSSTITATISVGDKLPEATFSYLDSSGEVQTTTVSELTKGKKAVLFAVPGAFTPTCSQKHVPGFVEKSGELRAKGIDTIACISVNDAFVMKAWKEDLKVNEEVLLLSDGNGTFTKAIGVELDLSDKPVGLGVRSRRYALLAEDGVVKLFNLEEGGAFTFSGAQDILDVL*

>Glyma19g37500.4   sequence type=predicted peptide   gene model=Glyma19g37500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASITLSRLVSSTLTTASFFPPITLPSKLSSLRLPTRRHPKPLRFSSSTITATISVGDKLPEATFSYLDSSGEVQTTTVSELTKGKKAVLFAVPGAFTPTCSQKHVPGFVEKSGELRAKGIDTIACISVNDAFVMKAWKEDLKVNEEVLLLSDGNGTFTKAIGVELDLSDKPVGLGVRSRRYALLAEDGVVKLFNLEEGGAFTFSGAQDILDVL*

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