SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G52960 | AT | Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein | chr3:19639699-19640403 FORWARD LENGTH=234 | SoyBase | E_val: 2.00E-94 | ISS |
| GO:0018119 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peptidyl-cysteine S-nitrosylation | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016209 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: antioxidant activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG0541 | KOG | Alkyl hydroperoxide reductase/peroxiredoxin | JGI | ISS | |
| PTHR10430 | Panther | PEROXIREDOXIN-5 | JGI | ISS | |
| PF08534 | PFAM | Redoxin | JGI | ISS | |
| UniRef100_G1JT87 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Type II peroxiredoxin E n=1 Tax=Vitis vinifera RepID=G1JT87_VITVI | SoyBase | E_val: 5.00E-105 | ISS |
| UniRef100_I1NAI6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAI6_SOYBN | SoyBase | E_val: 1.00E-151 | ISS |
|
Glyma19g37500 not represented in the dataset |
Glyma19g37500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g34821 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g190800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g37500.4 sequence type=transcript gene model=Glyma19g37500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCGAGATTCAAATCTGACATAATATTTTGTCATATATATTAAGATTTTTTTAGTAATTGTTTAAAATTTACAATGTAATGTAATTTTTAATTAAGTGGCGGTGTACTCACATTGTTTGATAATTAATCATTTTCCCCCACATATTTCGTTAATTATGATGCGATTATTGTTTTTTAAAGTAGTGATACAAAAAAATGTGTTACTAGCAAGTACTAGGGTGCGACTTGGCACAAAAAGAAGCACCCATAGTTTTGGGCTAACACGTGAGGCCTCCCCATACTCTTCATTCTTCACTCTTCACTCTTCACTCCCAACCCTAGCCAAACGCAAACCATTCATTCATTCAGTTCAGTAACTCACCTCACCATGGCCGCATCCATTACATTGTCCAGGCTCGTCTCTTCCACCCTCACCACTGCCTCTTTCTTCCCACCCATAACCCTGCCTTCCAAACTCTCCTCTCTCCGACTCCCCACCCGCCGCCACCCCAAGCCACTCAGATTCTCCTCCTCCACCATCACCGCCACCATCTCCGTCGGCGACAAGCTCCCGGAGGCCACCTTCTCCTACCTGGACTCGTCCGGCGAGGTGCAGACGACGACGGTGTCGGAACTGACGAAGGGGAAGAAGGCGGTGCTGTTCGCGGTCCCCGGCGCTTTCACCCCCACGTGCTCGCAGAAGCACGTGCCGGGCTTCGTGGAGAAATCGGGGGAGCTGAGGGCGAAGGGGATCGACACAATCGCATGCATTTCGGTCAACGACGCCTTCGTCATGAAGGCATGGAAGGAGGACCTCAAGGTCAACGAGGAAGTCCTCCTGTTATCTGACGGTAACGGAACCTTCACCAAAGCCATTGGGGTCGAACTTGATCTCAGCGACAAGCCCGTTGGTTTGGGCGTTAGGTCTAGGCGTTACGCGCTTTTGGCCGAGGATGGGGTTGTCAAGCTCTTCAATTTGGAGGAAGGGGGTGCCTTCACTTTCAGCGGCGCTCAGGACATCCTTGATGTTCTTTGAATTATTCTTCCTCTTTCGTTTATTCCACACTCCAGTTACTACTCTTTTCAATCCGGTTAGGGTTTCTTTCCTCTCATAATAACGTGGATGGATTAATTGGACCTCAGTGCTGTTACTGTTACCTGTGCCTATAATAATGAAACTCATGTGCTGGTGTTGAGCTTTTGTGGCCATTTGTTTGGCATTTTCAGGACCTTGTGTAAAGTTTATCAATTTTGGACTTCCTAGATCCTCTTCTGTTGGACAGGTAGGATTTACTCTGCAGTGACGCCTTTAATGATCGTTATGCTTTGACTTGTCTGATGTGTTTTAATCAATATGTTTTTCACTTGGTTGATTGAACAAAAAGTAACTTCTAAGATACGATTCCTCCTGATTTTAAAAAAAGTAACCTCATCCTCGAGATCACAATGTTCCTTTTCTATAAAAACATTCTCTGGTAAAGTAGATCACTTTTCAAAAACCTTCTAACTTGTGTATTCCTAGGTAGTTTCAATTAAGTTAAATAATGA
>Glyma19g37500.3 sequence type=CDS gene model=Glyma19g37500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGCATCCATTACATTGTCCAGGCTCGTCTCTTCCACCCTCACCACTGCCTCTTTCTTCCCACCCATAACCCTGCCTTCCAAACTCTCCTCTCTCCGACTCCCCACCCGCCGCCACCCCAAGCCACTCAGATTCTCCTCCTCCACCATCACCGCCACCATCTCCGTCGGCGACAAGCTCCCGGAGGCCACCTTCTCCTACCTGGACTCGTCCGGCGAGGTGCAGACGACGACGGTGTCGGAACTGACGAAGGGGAAGAAGGCGGTGCTGTTCGCGGTCCCCGGCGCTTTCACCCCCACGTGCTCGCAGAAGCACGTGCCGGGCTTCGTGGAGAAATCGGGGGAGCTGAGGGCGAAGGGGATCGACACAATCGCATGCATTTCGGTCAACGACGCCTTCGTCATGAAGGCATGGAAGGAGGACCTCAAGGTCAACGAGGAAGTCCTCCTGTTATCTGACGGTAACGGAACCTTCACCAAAGCCATTGGGGTCGAACTTGATCTCAGCGACAAGCCCGTTGGTTTGGGCGTTAGGTCTAGGCGTTACGCGCTTTTGGCCGAGGATGGGGTTGTCAAGCTCTTCAATTTGGAGGAAGGGGGTGCCTTCACTTTCAGCGGCGCTCAGGACATCCTTGATGTTCTTTGA >Glyma19g37500.4 sequence type=CDS gene model=Glyma19g37500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGCATCCATTACATTGTCCAGGCTCGTCTCTTCCACCCTCACCACTGCCTCTTTCTTCCCACCCATAACCCTGCCTTCCAAACTCTCCTCTCTCCGACTCCCCACCCGCCGCCACCCCAAGCCACTCAGATTCTCCTCCTCCACCATCACCGCCACCATCTCCGTCGGCGACAAGCTCCCGGAGGCCACCTTCTCCTACCTGGACTCGTCCGGCGAGGTGCAGACGACGACGGTGTCGGAACTGACGAAGGGGAAGAAGGCGGTGCTGTTCGCGGTCCCCGGCGCTTTCACCCCCACGTGCTCGCAGAAGCACGTGCCGGGCTTCGTGGAGAAATCGGGGGAGCTGAGGGCGAAGGGGATCGACACAATCGCATGCATTTCGGTCAACGACGCCTTCGTCATGAAGGCATGGAAGGAGGACCTCAAGGTCAACGAGGAAGTCCTCCTGTTATCTGACGGTAACGGAACCTTCACCAAAGCCATTGGGGTCGAACTTGATCTCAGCGACAAGCCCGTTGGTTTGGGCGTTAGGTCTAGGCGTTACGCGCTTTTGGCCGAGGATGGGGTTGTCAAGCTCTTCAATTTGGAGGAAGGGGGTGCCTTCACTTTCAGCGGCGCTCAGGACATCCTTGATGTTCTTTGA
>Glyma19g37500.3 sequence type=predicted peptide gene model=Glyma19g37500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASITLSRLVSSTLTTASFFPPITLPSKLSSLRLPTRRHPKPLRFSSSTITATISVGDKLPEATFSYLDSSGEVQTTTVSELTKGKKAVLFAVPGAFTPTCSQKHVPGFVEKSGELRAKGIDTIACISVNDAFVMKAWKEDLKVNEEVLLLSDGNGTFTKAIGVELDLSDKPVGLGVRSRRYALLAEDGVVKLFNLEEGGAFTFSGAQDILDVL* >Glyma19g37500.4 sequence type=predicted peptide gene model=Glyma19g37500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASITLSRLVSSTLTTASFFPPITLPSKLSSLRLPTRRHPKPLRFSSSTITATISVGDKLPEATFSYLDSSGEVQTTTVSELTKGKKAVLFAVPGAFTPTCSQKHVPGFVEKSGELRAKGIDTIACISVNDAFVMKAWKEDLKVNEEVLLLSDGNGTFTKAIGVELDLSDKPVGLGVRSRRYALLAEDGVVKLFNLEEGGAFTFSGAQDILDVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
