Report for Sequence Feature Glyma19g37490
Feature Type: gene_model
Chromosome: Gm19
Start: 44622304
stop: 44625371
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g37490
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G12100 AT
Annotation by Michelle Graham. TAIR10: pentatricopeptide (PPR) repeat-containing protein | chr5:3911388-3913838 FORWARD LENGTH=816
SoyBase E_val: 0 ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_B9SRF9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SRF9_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI0002337186 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002337186 related cluster n=1 Tax=unknown RepID=UPI0002337186
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g37490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g37490
Paralog Evidence Comments
Glyma03g34810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g37490 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g190700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g37490
Coding sequences of Glyma19g37490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g37490.2 sequence type=CDS gene model=Glyma19g37490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTCGACGAAGCCACTGACTTGTACTCTTCCATGCGAAAAGACGGTTTTATCCCTTCCACCCGTTCCGTCAATCGCTTGCTCCGAACCCTGGTGGATTCCCGACACTTCGAGAAAACCCTCCCTGTCTTCGCCGACGTTGTCGATTCTGGTATTCGACCCGATGCTGTCACTTACGGAAAGGCTGTTCAGGCGGCAGTGATGTTGAAGGACCTCGACAAGGGTTTTGAGTTGATGAAATCCATGGAAAAGGATGGAATGGGCCCTTCTGTGTTCGCTTATAACTTGATACTGGGTGGATTGTGTAAAGTGAGAAGGATCAAGGATGCTCGGAAGCTGTTCGATAAAACGATTCAGAGAAACGTGGTTCCGAATACTGTTACTTATAACACGCTCATTGATGGGTACTGTAAGGTGGGTGATATAGAGGAAGCTTTTGGCTTCAAGGAGAGGATGAGGGAACAAAATGTGGAGTGTAATCTTGTTACATATAATTCCTTGTTAAATGGTCTTTGTGGTTCGGGGAGGGTGGAGGATGCGAAGGAGGTGTTGTTAGAGATGGAGGACAGTGGTTTTTTGCCTGGTGGGTTTTTGAGTTTTGTGTTTGATGATCATTCGAATGTTGCTGGTGACGACAGTTTGTTTGATGGAAAAGAAATAAGGATCGATGAGCAAACTTATTGTATTTTGTTGAATGGACTATGCAGGGTTGGGAGAATTGAAAAGGCTGAAGAGGTTCTGGCCAAACTAGTGGAAAATGGAGTTACTTCAAGCAAGATTTCATATAACATATTGGTGAATGCATATTGCCAAGAGGGGTTGGAGCCTAATCGAATCACTTTTAATACTCTGATTAGCAAGTTCTGTGAAACTGGGGAGGTGGACCAGGCAGAGACATGGGTTAGGAGAATGGTAGAGAAGGGTGTTTCCCCGACTGTGGAAACCTATAACTTATTGATTAATGGTTATGGCCAGAGGGGCCATTTTGTCAGGTGTTTTGAGTTTCTTGATGAAATGGACAAGGCAGGGATAAAGCCTAATGTCATCAGCCATGGTTCTCTAATAAATTGTCTTTGCAAAGATCGTAAACTTATTGATGCTGAGATTGTGCTTGCAGATATGATAGGTCGTGGGGTTTCTCCGAATGCAGAAAGATATAATATGCTCATTGAAGCTAGTTGCTCATTGAGTAAATTGAAAGATGCTTTCAGATTTTTTGATGAAATGATACAAAGTGGAATAGACGCAACTCTTGTGACTCACAATACTTTGATAAATGGACTCGGAAGAAATGGAAGAGTAAAGGAAGCTGAGGATTTGTTTCTCCAAATGGCAGGCAAGGGATGTAACCCGGATGTAATAACATACCATTCTCTGATCTCAGGATATGCCAAGTCAGTAAACACCCAGAAATGCCTTGAATGGTATGATAAGATGAAGATGCTAGGCATAAAACCTACAGTTGGGACTTTTCACCCTTTGATCTGTGCATGCAGGAAGGAAGGCGTAGTGAAAATGGAGAAAATGTTTCAAGAAATGTTACAAATGGATTTAGTCCCAGATCAATTTGTATATAATGAAATGATTTACAGTTATGCTGAAGATGGAAATGTTCCTAAGGCAATGTCTTTGCACCAGCAGATGGTTGATCAGGGAGTTGATTCCGACAAGGTGACTTACAACTGCTTGATTCTAGCATATCTTAGAGATAGAAGGGTTTCTGAAACGAAGCATCTTGTTGATGATATGAAGGCTAAAGGACTGGTTCCAAAAGTTGATACTTATAACATTCTGGTTAAGGGGCATTGTGACTTAAAAGATTTCAATGGTGCATACTTTTGGTATAGGGAAATGGTAGACGGGGGTTTGCTTTTAAATGCCAGTATGTGCTACCAGCTAATTTCCGGGCTAAGAGAGGAGGGAATGCTGCGAGAGGCTCAAATTGCTGAAATTCAACCTTTATTTGCCAAAAAGAAACAAACGGTATTAAATTTTCAGCGCATACACGAGGGATGGTGTCGCAATCTTGTCCGAATATGA
Predicted protein sequences of Glyma19g37490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g37490.2 sequence type=predicted peptide gene model=Glyma19g37490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLDEATDLYSSMRKDGFIPSTRSVNRLLRTLVDSRHFEKTLPVFADVVDSGIRPDAVTYGKAVQAAVMLKDLDKGFELMKSMEKDGMGPSVFAYNLILGGLCKVRRIKDARKLFDKTIQRNVVPNTVTYNTLIDGYCKVGDIEEAFGFKERMREQNVECNLVTYNSLLNGLCGSGRVEDAKEVLLEMEDSGFLPGGFLSFVFDDHSNVAGDDSLFDGKEIRIDEQTYCILLNGLCRVGRIEKAEEVLAKLVENGVTSSKISYNILVNAYCQEGLEPNRITFNTLISKFCETGEVDQAETWVRRMVEKGVSPTVETYNLLINGYGQRGHFVRCFEFLDEMDKAGIKPNVISHGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAERYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTHNTLINGLGRNGRVKEAEDLFLQMAGKGCNPDVITYHSLISGYAKSVNTQKCLEWYDKMKMLGIKPTVGTFHPLICACRKEGVVKMEKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVPKAMSLHQQMVDQGVDSDKVTYNCLILAYLRDRRVSETKHLVDDMKAKGLVPKVDTYNILVKGHCDLKDFNGAYFWYREMVDGGLLLNASMCYQLISGLREEGMLREAQIAEIQPLFAKKKQTVLNFQRIHEGWCRNLVRI*