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Report for Sequence Feature Glyma19g37470

Feature Type:gene_model
Chromosome:Gm19
Start:44599619
stop:44600949
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g37470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36540AT Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:15325237-15326449 FORWARD LENGTH=249 SoyBaseE_val: 3.00E-68ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03031PFAM NLI interacting factor-like phosphatase JGI ISS
UniRef100_D7LJ49UniRef Annotation by Michelle Graham. Most informative UniRef hit: NLI interacting factor family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LJ49_ARALL SoyBaseE_val: 5.00E-67ISS
UniRef100_I1NAI1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NAI1_SOYBN SoyBaseE_val: 2.00E-177ISS

Expression Patterns of Glyma19g37470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g37470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g190500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g37470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g37470
>Glyma19g37470.1   sequence type=CDS   gene model=Glyma19g37470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGAAAGAACAAGAGTATCAAGTTTAGTGATTCTGAAGACGAGTATGATTATGAAACCGACGACTCGGGGACTGACTTGAATCTTCATTTGGAGAAACTGAATCTTGGACCACGAAAGAAGTTGCTTATTATGAACCTTAACGGGTTACTGCTCCTTAGAGTTCATCGTTGTTCTAAAAGTGAAATTCCGAAGTCTCGTGCAGCTGATGGGCACTACAGAGGCTATCTTGTTTTTAAGAGACCATTTAGTCAAGAGTTTATGAAATTCTGCTTGGAAAGATTTGAAGTTGGTATTTGGTCATCTGCAATGGAGCACAACATAGATGCTGCCTTGAATTATGCCATTGGATCTTTAAGAAGCAAACTGTTATTTGTTTGGGATCAACGTCAATGTACTAATTCCGGCTTCAAATCCTTAGAAAAAGCTTCGAAGCCTTTGTTTTTCAAGGAATTGAAGAAAGTTTGGGAAACTGTGAAGAAGGGAGGTCCATATTCTGCTTCAAATACTCTGTTGATTGATGACAGACCATACAAGGCGTTCCTCAATCCTCCTAATACAGCTGTATTCCCTCAGTCGTATAAGCCGGATAATTATGCGGATAGAGCTTTAGATCCAAAGGGTTTGATGTGCACGTACTTGAAGGGTGTTATGGAGTCTCCTGATGTTCAGTCTTACGTGAAGGATCATCCTTTTGGAATACCTGCAATTTCTTCTACGCATCCAGATTGGAATTTTTACTCCCCAGTGAAAGAATGTGTTGACAAAAAGAGAGGGGATTGA
Predicted protein sequences of Glyma19g37470
>Glyma19g37470.1   sequence type=predicted peptide   gene model=Glyma19g37470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGKNKSIKFSDSEDEYDYETDDSGTDLNLHLEKLNLGPRKKLLIMNLNGLLLLRVHRCSKSEIPKSRAADGHYRGYLVFKRPFSQEFMKFCLERFEVGIWSSAMEHNIDAALNYAIGSLRSKLLFVWDQRQCTNSGFKSLEKASKPLFFKELKKVWETVKKGGPYSASNTLLIDDRPYKAFLNPPNTAVFPQSYKPDNYADRALDPKGLMCTYLKGVMESPDVQSYVKDHPFGIPAISSTHPDWNFYSPVKECVDKKRGD*






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