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Report for Sequence Feature Glyma19g37350

Feature Type:gene_model
Chromosome:Gm19
Start:44530898
stop:44531935
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g37350
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36640AT Annotation by Michelle Graham. TAIR10: embryonic cell protein 63 | chr2:15357019-15358552 REVERSE LENGTH=448 SoyBaseE_val: 5.00E-13ISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
PF02987PFAM Late embryogenesis abundant protein JGI ISS
UniRef100_I1NAH1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAH1_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9ZTY1UniRef Annotation by Michelle Graham. Most informative UniRef hit: 35 kDa seed maturation protein n=1 Tax=Glycine max RepID=Q9ZTY1_SOYBN SoyBaseE_val: 4.00E-101ISS

Expression Patterns of Glyma19g37350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g37350
ParalogEvidenceComments
Glyma03g34680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g37350 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g189400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g37350
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g37350
>Glyma19g37350.1   sequence type=CDS   gene model=Glyma19g37350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGAGACGGCAATTCAAGGAGGAGAGAGCGGAGGCAGCGGCCAAACTGGCAGCGAAAGACATCGGCGATATCAACAGAGCAAACGAGCGCGACGAGGGGTACGACTTGCGGAACGAAGCCAACTTCAAGCAAGCACGAGCGGAGGCAGCTGCAAAGCTCGCCGCGAAGGATCTGGAGGACGCTAACAGATTAAGGGACAGCACTCTAATCAACACTACATGTCATGATCACGATGAGAACAAACCCAGTTTGATAGGGTCCATGTTAAGAGCCGCCAAGGAAGCCGTGGTTGGCAAGCCTCACCACGACGAAGTTGACAACAGCTCAGGGTTTTATGAGAAGGCCAAGGAAACAAAGGTCGACGCGGCTGGGTCCAAGATGGGTGAATACGCAGATTATGCCACACAGAAGGCGAGGGAAACGAAGCAGAAGGCAAAAGAAGCAAAAGACTATGCTGCGGATAAGGCTAAGGATGCTAAAGATACAACAGTGCAAACCGCTGCTAAAAGGGCTATCGGTTTCTTCTCGGGGGGCAACAAAGACCAAACAAAGGAGGAGGAGGAAACGAGTCGGAGAATGCAGGAGGTGAGGGTGCAAGATAAGGAATACGGAACGGGACGGGGTGGAGAGAAGTTGGTGATAAAAATGGAAGAGTCGAGGCCAGGAGCGGTGGCGGATGCGCTCAAAGCAGCCAATAAGGCCATGGACGGCGTTATGGAGGAAGAAGGCGTGCTTCATGTGGAGCGTCGTAGAGAGAAAATTTGA
Predicted protein sequences of Glyma19g37350
>Glyma19g37350.1   sequence type=predicted peptide   gene model=Glyma19g37350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASRRQFKEERAEAAAKLAAKDIGDINRANERDEGYDLRNEANFKQARAEAAAKLAAKDLEDANRLRDSTLINTTCHDHDENKPSLIGSMLRAAKEAVVGKPHHDEVDNSSGFYEKAKETKVDAAGSKMGEYADYATQKARETKQKAKEAKDYAADKAKDAKDTTVQTAAKRAIGFFSGGNKDQTKEEEETSRRMQEVRVQDKEYGTGRGGEKLVIKMEESRPGAVADALKAANKAMDGVMEEEGVLHVERRREKI*






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