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Report for Sequence Feature Glyma19g37325

Feature Type:gene_model
Chromosome:Gm19
Start:44516528
stop:44517816
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g37325
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03800AT Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr5:1010894-1013584 REVERSE LENGTH=896 SoyBaseE_val: 2.00E-129ISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PTHR24015:SF184Panther SUBFAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_D7LWU0UniRef Annotation by Michelle Graham. Most informative UniRef hit: EMB175 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LWU0_ARALL SoyBaseE_val: 6.00E-127ISS
UniRef100_I1NAG8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAG8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g37325
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g37325 not represented in the dataset
Glyma19g37325 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g37325
ParalogEvidenceComments
Glyma03g34660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g37325 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g37325
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g37325
>Glyma19g37325.1   sequence type=CDS   gene model=Glyma19g37325   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGGCAGCGGCGGCGGCGGCCTCCACTGCAAATCCTTCTTGAAGTCTTCCCTTTCTCCTCCATACTCCAAACCACCGCCCTCCCTCTCTCTCCGTCATGGCACCCTCCACGCCACGCTCCTCAAACGCGACCAAGACACCCATCTCTCCACTTACCTCAAACTCAACCTCTTCCCCCACGCTCTTGGTCTTTGTGGAACTCTTGGTCATCTTGATATGGGTAAGCAAATCCATTGCCATGTGGTTAAACGTGGCTTGGGATGTAATTTGGAAGTTGGAAATGCAGTTGTTAGCATGTATTTTAAGTGTGGGAGTGTGGATGATGCAATGAAGGTTTTCAATGATATGCCTTGTACTGATATAGTTACATGGAATACTTTGATTTCTGGCAATCTTATGCACAGACAGGGGGATAGAGCATTGGAAATATGGGTGGAGATGCTGCAGGAGGGCATGAAGCCTAACCAAGTTACATTTGTTTTGATCATTTCAGCTTACAGGAAAACTAACTTAAATTTGGTTGATGATTGTCGTAGTTTGTTTAATTCAATGAGAACTGTTTATCAAATTGAGCCCACATCCAAGCATTATGCTTCCTTCATCAGTGTTTTGGGTTACTGGGGTCTTCTGCAAGAAGCACTAGAAACTATCAATAACATGCCTTTCCAGCCTTCTGCTCTTGTTTGGCGCGCTTTGCTTGATGGTTGTAGATTGCATAAGAATGCGTTGATTGGAAAATGGGCTGCTCAGAATATTCTTACCCTAGAACCTAAAGATCCTTCAACATTTATACTTGTTTCAAATTTGGAGGATATGAGAGAAAAGGGGTTTTGCAAACACCCAGCTCAAAGTTGGATCGTTTGTGAGAAGAAAATAAATACATTTTATCCGAGAGATGGATCACATCCACAGGAGAAAGATATACACAGAGGTTTGGAAATTATGTTCTTGGAGTGCCTAAAAATTGGATATGAACCTGACACGAGCTTTGTTCTCCATGAAGTAGAGGAGTATCACAAGAAAATTTTTCTATTCCATCACAGTGCTAAACTGGCAGCAACTTATGGGATGCTGATGACCAAGCATGGAAAACCCATTCGGATTAGGGATATATTTCTGAGAGATTCTTCTGGATTTCATTGTTTCTCCAATGGCCAGTGCTCGTGTAAAGACTGCTGGTGA
Predicted protein sequences of Glyma19g37325
>Glyma19g37325.1   sequence type=predicted peptide   gene model=Glyma19g37325   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGSGGGGLHCKSFLKSSLSPPYSKPPPSLSLRHGTLHATLLKRDQDTHLSTYLKLNLFPHALGLCGTLGHLDMGKQIHCHVVKRGLGCNLEVGNAVVSMYFKCGSVDDAMKVFNDMPCTDIVTWNTLISGNLMHRQGDRALEIWVEMLQEGMKPNQVTFVLIISAYRKTNLNLVDDCRSLFNSMRTVYQIEPTSKHYASFISVLGYWGLLQEALETINNMPFQPSALVWRALLDGCRLHKNALIGKWAAQNILTLEPKDPSTFILVSNLEDMREKGFCKHPAQSWIVCEKKINTFYPRDGSHPQEKDIHRGLEIMFLECLKIGYEPDTSFVLHEVEEYHKKIFLFHHSAKLAATYGMLMTKHGKPIRIRDIFLRDSSGFHCFSNGQCSCKDCW*






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