Glyma19g37300 - SoyBase

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Report for Sequence Feature Glyma19g37300

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44499877
stop:	44502152
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g37300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36650	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr2:15359994-15361194 FORWARD LENGTH=373	SoyBase	E_val: 3.00E-39	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7I9D9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein CHUP1 n=1 Tax=Medicago truncatula RepID=G7I9D9_MEDTR	SoyBase	E_val: 7.00E-110	ISS
UniRef100_UPI000233E017	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E017 related cluster n=1 Tax=unknown RepID=UPI000233E017	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g37300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g37300

Paralog	Evidence	Comments
Glyma03g34630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g37300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g189000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g37300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g37300

Limit To All Plant Sequences

>Glyma19g37300.1   sequence type=CDS   gene model=Glyma19g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACACAACATCAAAGCCTGAGGTCCTAATAAAGCCAATTATCCTCAAAGCTGGTGTTCCTTTGGCTGTGTCTTTTGCTGGTTGCATCTATGCTTGGTTCGTGGCAAAGAAAAGCCTCTCTAAAACCTCTTCTTTATCACTAAATGAAGGAAGTTCCCACGAAACCAATTCCCATCTTGAGCCAAACTATGAAGAAAGTTGTCATAGTCATAGCCTTTCATGTTTGGAAGATGAAGGACATAGTACAACAATAGATCAAAGTGTTGTTGCTGAAAGTTCGATGATCAATGACACCCCGTGTTTAGAAGAAGAGATTAATGGCCTGAGAAGCATGATTGAAGGTATGCATATGAAGGAGTTGGCCTTACGTTTGCAGTTTGGTCGCTATTGTGATATGAAAGAGCAAGAAACTGTGGTTGGGGAGATAAAAAACATGTTGTCACTGGAGACTGCTCGTGTTGGCTTCTTGGACAGGGAGATTTCGTCGATGGAGATGCAGAATAGGAGGTTGGAGAGTTTTGTTGCTCAATATCTCAGAGTTGTGGAACAGATTGAGCGTTGGAAATCTGAGAATAGAATGCTTCGGAGGAAGTTTCAGAAGCTAATGAGGAAATCAAAGGCACAAACCCGCCTCGCGAAGGAGCAGGCTTCGAAGCTCAAACTGGAAGAAGAAGAAATCTTGAGAAGCCGTGATGCCTTGGAAACAAAAATTGATGTCATAGGTAAACTTGAGGATAAAATGGAAGAGCTGCAGAGGGCTTTGGATCAATTGCAGGATGAGAAGAATGAACTTCTGAAGAAGCTTGACACAGCAGAAAAATCCTATGCTTCTAAGATTGAAGCAGGAGATGTAAGTAGGGAAGAGTACACAAAGCTTCTGGATGAATTGGAGCAGGCCAAGAAAGAACGAGCAGATGAAGCTAAAGAACTGATTTACTTGCGGTGGACAAATGCTTGTTTAAGGCATGATCTAGTGAGGCACCATGAACAACAACAGAACCAGGATAAAAACCATTTAGAATTGGAATTTGGAAGAAATGATGTACTTATCCATTATGACTCAGAGCATGAACTACACAATTCCCTTTTGGAGCATCACAGTGATCCTTCCTTTGATGAGCATACTAGGGGTCATGATCACAGTGACAGTGCTTGTTCAAAAAGGACAAAGTTGCTTGAAAGGCTAAAGAGATGGGTTGATGGCAGTGAAAAAGCGAGGGTTAGGCATTCTGTTTCCAAAGGGGCAGAGGAACATCTAGTTCCTAGAAGGAAGTCATGCTCTAGTGCTTGA

Predicted protein sequences of Glyma19g37300

Limit To All Plant Sequences

>Glyma19g37300.1   sequence type=predicted peptide   gene model=Glyma19g37300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENTTSKPEVLIKPIILKAGVPLAVSFAGCIYAWFVAKKSLSKTSSLSLNEGSSHETNSHLEPNYEESCHSHSLSCLEDEGHSTTIDQSVVAESSMINDTPCLEEEINGLRSMIEGMHMKELALRLQFGRYCDMKEQETVVGEIKNMLSLETARVGFLDREISSMEMQNRRLESFVAQYLRVVEQIERWKSENRMLRRKFQKLMRKSKAQTRLAKEQASKLKLEEEEILRSRDALETKIDVIGKLEDKMEELQRALDQLQDEKNELLKKLDTAEKSYASKIEAGDVSREEYTKLLDELEQAKKERADEAKELIYLRWTNACLRHDLVRHHEQQQNQDKNHLELEFGRNDVLIHYDSEHELHNSLLEHHSDPSFDEHTRGHDHSDSACSKRTKLLERLKRWVDGSEKARVRHSVSKGAEEHLVPRRKSCSSA*

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