Glyma19g37280 - SoyBase

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Report for Sequence Feature Glyma19g37280

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44480522
stop:	44486632
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g37280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03910	AT	Annotation by Michelle Graham. TAIR10: EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). \| chr1:996432-100	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2370	KOG	Cactin	JGI		ISS
PTHR21737	Panther	POLYGLUTAMINE BINDING PROTEIN 1/MARVEL (MEMBRANE-ASSOCIATING) DOMAIN CONTAINING 3	JGI		ISS
PTHR21737:SF4	Panther	CACTIN-RELATED	JGI		ISS
PF09732	PFAM	Cactus-binding C-terminus of cactin protein	JGI		ISS
PF10312	PFAM	Conserved mid region of cactin	JGI		ISS
UniRef100_G7L4Y2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cactin (ISS) n=1 Tax=Medicago truncatula RepID=G7L4Y2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NAG1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAG1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g37280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g37280

Paralog	Evidence	Comments
Glyma03g34590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g37280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g188800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g37280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g37280

Limit To All Plant Sequences

>Glyma19g37280.1   sequence type=CDS   gene model=Glyma19g37280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAGTAGCGGAAGAGACCGAAGACGAAGAAGGTCAGATGACTCTGAATCCGAATCACCTTCGGATTCTGACTCCGACAGACGCCGCGGTAGCAGTAGTCGCCGCTCGCGGCGGGACTCCGACGGCGACAGGAAGAAGAAGTCCACGAAGTCTGAATCCGAGTCACATTCCGATTCCGACTCCGACTCCGACAGACGCCACCGTAGCAGCAGCCGCCGGCCTCGGCGGGACTCTGACGGCGATAGGAAGAAGAAGTCCTCGAGGAGCATCACAGAAGAGGAAATTACGCAGTACATGACCAAAAAGGCCCAATCGAAGGCAATGAAAGTCGCAAAAAAGTTGAAAACCAGTACGGTGTCGGGCTATTCCAACGATTCGAATCCGTTTGGTGACTCCAATCTCAACGAGAAGTTTGTTTGGCGGAAGAAGATTGAGCGCGATGTTTCACAAGGTGTGTCTATTGAAGCGTTTTCAAAGAAGGCAGAGAAAAAGAAACAGAGAGAAAGGATGGCAGAAATTGAAAAAGTAAAAAAGAGAAGAGAGGAAAGGGCACTTGAGAAAGCACGACACGAGGAAGAAATGGCACTGTTAGCTAGAGAGCGTGCTCGAGCTGAGTTTCAGGACTGGGAAAAAAAAGAAGAGGAGTTTCATTTTGATCAAAGCAAAGTTAGGTCAGAAATTAGATTGCGTGAAGGGCGTGCCAGACCAATTGATGTCCTAACCAAGCATCTCAATGGCTCTGATGATTTGGATATAGAAATAAATGAACCATACATGGTTTTCAAGGGTTTGACTGTGAACGAAATGAGTGAGCTACGTGACGACATCAAAATGCATCTAGACCTTGACAGGGCAACACCAACTCATGTAGAATATTGGGAGGCACTCCTTCTGGTATGTGATTGGGAGCTAGCTGAAGCCCAAAGAAAGGATGCACTTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCTGCTGAGCTGCTTGCAGAAGAAAGGGGTCTGCATTCCAGTGTTGAGCCAGATGTGAAGAAGCTTTTGCAGGGGAAGACACATGCAGAGTTGGAGGCTTTACGGGTTCACATTGAATCAGAAATGCGTACTGGTACAGCAAAGGTGGTTGAGTACTGGGAGGCCATTTTAAAACATCTCCACATTTATAAGGCCAAGGCTTGTTTAAAGGAAATTCATGCTAAATTGCTACGTAAGCATTTGCAATCTCTTGAGAGACCATTGGAGGATGAAGATAAATTAGAGAATGCTCATGTTATGGTACCTGAGGAGGAAGATACTGAGGATGATATTAAAGTCCGATCTGCAGATGAATCATTCTCACCAGAGCCCATTAGAGAGGATCAAGAAGCTGATGATGAGGCTGGATCATTTTCACCACAATTGTTGCACAGTGATGAAAATGAGGAAGCTATTGACCCAGAAGAAGATAGAGCTATGCTGGAGCGGAATCGTAAGGCTGTATTAGAAGAGCAGCAAAGACGAGTTCAGGAAGCAATGGCATCAAAGCCAGCTCCTTCTGAAGATAATTTTGAGATGAAGGCCTTAAAAGCTATGGGGGATATGGAAGATGGAGATTCTGTGTTTGGATCTGGTGCTGAAGTTAACCTGGATTCCCAGGTTTATTGGTGGCATGACAAATACAGACCTAGGAAGCCGAAGTATTTCAACCGTGTTCACACTGGATATGAGTGGAACAAATATAATCAGACTCACTATGATCATGACAACCCACCTCCAAAGATTGTCCAAGGTTACAAATTTAATATTTTCTATCCTGATCTTGTAGACAAGACAAAAGCTCCAACCTACACCATTGAGAAGGATGGCAGCAACGGGGAGACTTGCATTATAAGATTCCATGCTGGGCCACCATACGAAGACATAGCTTTCCGGATCGTTAACAAAGAATGGGAATATTCTCATAAGAAAGGTTTTAAGTGTACATTTGAACGTGGAATTCTGCACGTGTACTTCAATTTCAAACGCCATCGCTACCGAAGATAA

Predicted protein sequences of Glyma19g37280

Limit To All Plant Sequences

>Glyma19g37280.1   sequence type=predicted peptide   gene model=Glyma19g37280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKSSGRDRRRRRSDDSESESPSDSDSDRRRGSSSRRSRRDSDGDRKKKSTKSESESHSDSDSDSDRRHRSSSRRPRRDSDGDRKKKSSRSITEEEITQYMTKKAQSKAMKVAKKLKTSTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVSQGVSIEAFSKKAEKKKQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVNEMSELRDDIKMHLDLDRATPTHVEYWEALLLVCDWELAEAQRKDALDRARVRGEEPPAELLAEERGLHSSVEPDVKKLLQGKTHAELEALRVHIESEMRTGTAKVVEYWEAILKHLHIYKAKACLKEIHAKLLRKHLQSLERPLEDEDKLENAHVMVPEEEDTEDDIKVRSADESFSPEPIREDQEADDEAGSFSPQLLHSDENEEAIDPEEDRAMLERNRKAVLEEQQRRVQEAMASKPAPSEDNFEMKALKAMGDMEDGDSVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR*

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