SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G27650 | AT | Annotation by Michelle Graham. TAIR10: Eukaryotic release factor 1 (eRF1) family protein | chr4:13803459-13807556 REVERSE LENGTH=378 | SoyBase | E_val: 6.00E-100 | ISS |
| GO:0006415 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational termination | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation release factor activity | SoyBase | N/A | ISS |
| KOG2869 | KOG | Meiotic cell division protein Pelota/DOM34 | JGI | ISS | |
| PTHR10853 | Panther | PELOTA | JGI | ISS | |
| PF03463 | PFAM | eRF1 domain 1 | JGI | ISS | |
| PF03465 | PFAM | eRF1 domain 3 | JGI | ISS | |
| UniRef100_G7L4Y7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pelota-like protein n=1 Tax=Medicago truncatula RepID=G7L4Y7_MEDTR | SoyBase | E_val: 4.00E-164 | ISS |
| UniRef100_I1NAF6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAF6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g37250 not represented in the dataset |
Glyma19g37250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g188500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g37250.1 sequence type=CDS gene model=Glyma19g37250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACTCTTGGAAAAGGATTTCGCGGTGAACCAAACCGGAACTGCGAAGCTCGTGGCCGAAGAACCCGACGACGTGTGGCTCCTCTACAACCTCATCCTCCCCGGCGACATCGTTTCGACCGACACCACCCGCAAGGTCCACCTCGATTCCTCCGCCAAGAAGAACACCGCCTCACGTGTGAAACTCACCCTCGACATCAAAGTCACGTGCCGTGACTTCCACAAAGACTCCTCCACTCTCCGACTCCACGGCCGCAACCTCCAACCCAACCAGCACGTCGCCGCCGGCTCCTTCCACACCCTCACCCTCGAACCCCACAAACCCTTCCACCTCCGCAAGAAGCTTTGGCAAAACGACGCCGTCGAAACCCTAAACGAATCCACCGAGAATTCCAATCCCAATACCAATTCCCCCGACCTCGCCGTCGTTCTCTTCCACCCGCACCATGCGGAGATTCACCTTATCGCACAGGGAGTCGCCACGCGCTGCACCAAGATCGAACCCTCTTCAAACTCCAGAAACTCCGTGTATTTCCGACAGGTGTTCGCGGCGTTCGTGAAGCGCGTGGATTTTAAGGTTGTGAAGCGCGTGGTGATAACGAGCGAGGAGTTTCGTAGGTTTGTGATGTCGGAAGCGAGGAAGTCGAGGATGCGGTCGATCGAGGAGAACCAGTCGCGAATAATGGTCGTTGCGGGCGGTGATAGTTTGGAGAAAGTGATGGGTGACCGGGCGGTGATGGAGTTGGTGAAGGACAAGAAGGTGGCGGCGTTTAGAGAGTTGTGGGAGATGGTGTGCGACGATTCGGACCGCGCGTGTTATGGACCTGCGGAGGTGGAGCGTGCGCGTGAGATGAGGGCCATTGAGACACTTCTGATAACCGATGATCTTTATAGGAACGAAGATGTTGAGACGAGAAAAAAGTACGCGAGTTTGGTGAAGTCGGTGAAAGAGGGTGGAGGAAAGGCTTTGGTGTATTCGTCGATGCATGTTTCTGCACCGCAACTCGCTCAACTCACGGGTGTTGCGGCAATTCTCAGGTTTCCCTTGCCTGAACTCGAAGATGTAAATGGGTGCTGA
>Glyma19g37250.1 sequence type=predicted peptide gene model=Glyma19g37250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLLEKDFAVNQTGTAKLVAEEPDDVWLLYNLILPGDIVSTDTTRKVHLDSSAKKNTASRVKLTLDIKVTCRDFHKDSSTLRLHGRNLQPNQHVAAGSFHTLTLEPHKPFHLRKKLWQNDAVETLNESTENSNPNTNSPDLAVVLFHPHHAEIHLIAQGVATRCTKIEPSSNSRNSVYFRQVFAAFVKRVDFKVVKRVVITSEEFRRFVMSEARKSRMRSIEENQSRIMVVAGGDSLEKVMGDRAVMELVKDKKVAAFRELWEMVCDDSDRACYGPAEVERAREMRAIETLLITDDLYRNEDVETRKKYASLVKSVKEGGGKALVYSSMHVSAPQLAQLTGVAAILRFPLPELEDVNGC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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