Glyma19g37230 - SoyBase

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Report for Sequence Feature Glyma19g37230

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44449368
stop:	44454119
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g37230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36680	AT	Annotation by Michelle Graham. TAIR10: Modifier of rudimentary (Mod(r)) protein \| chr2:15368980-15370726 REVERSE LENGTH=218	SoyBase	E_val: 3.00E-95	ISS
GO:0000813	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ESCRT I complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG3270	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13678	Panther	WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED	JGI		ISS
PTHR13678:SF1	Panther	gb def: similar to hypothetical protein flj12750 [mus musculus]	JGI		ISS
PF07200	PFAM	Modifier of rudimentary (Mod(r)) protein	JGI		ISS
UniRef100_G7L4Z0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein-sorting-associated protein-like protein n=1 Tax=Medicago truncatula RepID=G7L4Z0_MEDTR	SoyBase	E_val: 2.00E-105	ISS
UniRef100_I1NAF3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAF3_SOYBN	SoyBase	E_val: 1.00E-167	ISS

Expression Patterns of Glyma19g37230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g37230

Paralog	Evidence	Comments
Glyma03g34540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g37230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g188300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g37230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g37230

Limit To All Plant Sequences

>Glyma19g37230.2   sequence type=transcript   gene model=Glyma19g37230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCCTTATTGGATCAAACTGGAAAGAGGGCCCCAGCAACAGTCAATCCAGAGCCCCAAAATGGTTTTATGCTTAAAATTTTTTATAAAAAAAATAAAGCCATTTTCCGATTTCTAAGAAGGAACCAGTTTTTGTTCCCACTTTCCTAAGTTTCCTTCTCGCTCCCGTCTCTGAAATTTCGAGGGTTTCATCGTTGCTGAATCAACAATTCGGAACCAGTTAGCAATGTTCAGATTCTGGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCGTCGGTGGTGAGTTCACCAACTTCGTCGAGGCCTGTTACACCGACTGCATCTTCTTCTTCATTATCACAGAGGCCTTCGTCTCATGTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAATGTAGAATAATTCGGACAACCGAGTTAGCTGCTGCTAAGGAGAAACTAAATGAGCTTGAGAAGCAGAAAGAAGACATGTTGAAATTGAATTCCGCAGCATCCCTTCTCCAAAGGATTCAAGAGTCTGTGAATAAGACCGACGAGGAATCTGAAAACTTGCACCACAATCTCCTTGACAGAGAGATTGACCTTGGTGCTTTTTTGCAAAAGTACAAGAAGCTACGTACCACTTACCACAGGAAGACTCTCGTACATCTTGCTGCCAAAACATCAACAGTATGAGCACTGACATGAAATATTAAGAAATTAAAACTGGTTTTGGCAAGTATGTATTTGATTTTTGGTTCATTATTGTCAATAGTTATCATTGGTCAAAGATACTTGCCACCAAATTACATAGAGTCACAGTCGTTGGGATAGAACCATCTACTACAAATTAGATTGTTCATATATGTGCAGCCTGAGATTGTTCATTGTGGTGACATTGTCGAGTGGTTTCATGCCACTTGGAATGAGGTATGGACTTGCATTTACTTTTCTAGTTTGCCATCGGCTATCTTCAACTTTATTTGTATGAACTCTGAAGTGTGCTGTAGCTTATGAGATCATCATCGCCGATATAGGATTTACTGTTGTGTTGTAAAATGTAAAAAATGCTGACTTTCTTTTC

Coding sequences of Glyma19g37230

Limit To All Plant Sequences

>Glyma19g37230.1   sequence type=CDS   gene model=Glyma19g37230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAGATTCTGGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCGTCGGTGGTGAGTTCACCAACTTCGTCGAGGCCTGTTACACCGACTGCATCTTCTTCTTCATTATCACAGAGGCCTTCGTCTCATGTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAATGTAGAATAATTCGGACAACCGAGTTAGCTGCTGCTAAGGAGAAACTAAATGAGCTTGAGAAGCAGAAAGAAGACATGTTGAAATTGAATTCCGCAGCATCCCTTCTCCAAAGGATTCAAGAGTCTGTGAATAAGACCGACGAGGAATCTGAAAACTTGCACCACAATCTCCTTGACAGAGAGATTGACCTTGGTGCTTTTTTGCAAAAGTACAAGAAGCTACGTACCACTTACCACAGGAAGACTCTCGTACATCTTGCTGCCAAAACATCAACATTATCATTGGTCAAAGATACTTGCCACCAAATTACATAG

>Glyma19g37230.2   sequence type=CDS   gene model=Glyma19g37230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAGATTCTGGGGATCACAAGAGCAACAATCACAGGATGGTTCTTCGCAGTCACAGTCGTGGTATCCGCCGTCGGTGGTGAGTTCACCAACTTCGTCGAGGCCTGTTACACCGACTGCATCTTCTTCTTCATTATCACAGAGGCCTTCGTCTCATGTTCCACCTTCTGAAGCTGCTGCAGTTATTGCCGTTTTGAAGGACAAGAGTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAATGTAGAATAATTCGGACAACCGAGTTAGCTGCTGCTAAGGAGAAACTAAATGAGCTTGAGAAGCAGAAAGAAGACATGTTGAAATTGAATTCCGCAGCATCCCTTCTCCAAAGGATTCAAGAGTCTGTGAATAAGACCGACGAGGAATCTGAAAACTTGCACCACAATCTCCTTGACAGAGAGATTGACCTTGGTGCTTTTTTGCAAAAGTACAAGAAGCTACGTACCACTTACCACAGGAAGACTCTCGTACATCTTGCTGCCAAAACATCAACAGTATGA

Predicted protein sequences of Glyma19g37230

Limit To All Plant Sequences

>Glyma19g37230.1   sequence type=predicted peptide   gene model=Glyma19g37230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRFWGSQEQQSQDGSSQSQSWYPPSVVSSPTSSRPVTPTASSSSLSQRPSSHVPPSEAAAVIAVLKDKSVDELRKLLSDKDAYQQFLHSLDQVKIQTNLKDELCKENLQLAEENLQKEPRIMELRNQCRIIRTTELAAAKEKLNELEKQKEDMLKLNSAASLLQRIQESVNKTDEESENLHHNLLDREIDLGAFLQKYKKLRTTYHRKTLVHLAAKTSTLSLVKDTCHQIT*

>Glyma19g37230.2   sequence type=predicted peptide   gene model=Glyma19g37230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFRFWGSQEQQSQDGSSQSQSWYPPSVVSSPTSSRPVTPTASSSSLSQRPSSHVPPSEAAAVIAVLKDKSVDELRKLLSDKDAYQQFLHSLDQVKIQTNLKDELCKENLQLAEENLQKEPRIMELRNQCRIIRTTELAAAKEKLNELEKQKEDMLKLNSAASLLQRIQESVNKTDEESENLHHNLLDREIDLGAFLQKYKKLRTTYHRKTLVHLAAKTSTV*

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