SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27930 | AT | Annotation by Michelle Graham. TAIR10: PLATZ transcription factor family protein | chr2:11892369-11893488 FORWARD LENGTH=189 | SoyBase | E_val: 2.00E-67 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| PF04640 | PFAM | PLATZ transcription factor | JGI | ISS | |
| UniRef100_I1NAF2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAF2_SOYBN | SoyBase | E_val: 8.00E-157 | ISS |
| UniRef100_Q01HI5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0142I02-OSIGBa0101B20.4 protein n=2 Tax=Oryza sativa RepID=Q01HI5_ORYSA | SoyBase | E_val: 4.00E-66 | ISS |
|
Glyma19g37220 not represented in the dataset |
Glyma19g37220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g34530 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g188200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g37220.2 sequence type=transcript gene model=Glyma19g37220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACATCTCCAAATTACATCCAACGGTTGTCGTCTTCCCACGCTCACTGCCTTCAATCTCATCCATCCAATCCCTTATTTCTTTAATCACCGTTTGTCCTTATACTCTTTAGCGTTGCTGTGTAGTTGAATTCTAAGTTGAAGGCCGTTTATTATTATTCTCTTTGCTCTTTCTTTCCATCGCCATTCTCATCTCAGCACCTTGCTTCCTCTCTCAATCCGCAACTATCTTTTCAACAATTGAATCCCATCACCATTCTTCACTAACCCATCGAGCCACATTATTATTATTATTATTATTATCATCCACGGGTACCGACAATGGTATATGTATTTATTTATAAATCTATATAGAAATTTTCACGAATCTATTATGCGTGCTAGTCTCAGATTTTCTTTATGTCACTGAATTGATGTTTTATAGAATGTCCATTTTTCCAACAATGGGATTTAAGCTGCAGGAGGACACAGCTGTTCTGGTACCTCCTTGGCTTGAACAACTTCTTCACACACCTTTCTTCAACGTGTGTCGGATTCACGCAGAGGCCGCTAGAAGCGAGTGTAATATGTTTTGCCTACATTGCAATGGCGAAGCCTTTTGCTTTTATTGCAGTTCTTCAAGACACAAAGATCATCAAGTCATTCAGATAAGGCGATCTTCTTATCACGATGTAGTGAGGGTTTCAGAAATCCAGAAAGTGTTGGACATAAGTGGAGTGCAGACATATGTAATCAACAGTGCTCGAGTTTTGTTCCTGAATGTGAGGCCTCAGCCAAAATCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGCGGAAGGAGCCTCTTGGACCCATTTCGGTTTTGTTCTTTGGGATGTAAGCTTGAAGGAATAAGGAAAAATGGGGATGCAAGCTTTGCTTTGGATGGTAGGAATGAAGAATTAACAATGGATACTTCAAGAGGATCAGTCTCATCAAGACAGCAAGAAGAAGAATTGCGTGAAGGTTCAACACAAGACATGTATCCAGCCACGCCTTCTCCATCTGCTTCAAATTCAAGGAGAAGAAAAGGCATACCTCATAGGGCACCTTTTGGCTCCTAATTAATCCTAATGGTTATTCCTTCTACATACACTCCAAGTTGGTACATATTCAATATTCAACCTCATCAACATTTTTTTTTACTTGTAATACACAACCTTCTTTGGTGGGTAGCCTCGTGATTATAATTTTTTTTCAATAAAAATAATGAAAAGAATAGGAGCCTTTGGAGGGGGGCCTTGTCCAAGGTCCGTGATGTGGGAAAAGAAAGGGTATATAGGAAAGTTCCCTCTTTTCGGGTCTAGGTTCCAAAAAACAAATTCCTCTTGTGAAGATTCAATAATGCATATTTTTAATATTTAATTGTTTTTGGTGTACACTTAATTAAGGAATAAAAAGGCAAGTCTTTGGGGAGTCCGTTTTATAGTTTTCAATGGCCCACCATCCACATGGACCGTTTACATAAAATAACCACAACTTTTTATATGTTTTGTATTTTTATTTTATTAATTATTTAATTGAGCAACTTACAATAATATTTTCTGAAATTTCG
>Glyma19g37220.1 sequence type=CDS gene model=Glyma19g37220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGACACAGCTGTTCTGGTACCTCCTTGGCTTGAACAACTTCTTCACACACCTTTCTTCAACGTGTGTCGGATTCACGCAGAGGCCGCTAGAAGCGAGTGTAATATGTTTTGCCTACATTGCAATGGCGAAGCCTTTTGCTTTTATTGCAGTTCTTCAAGACACAAAGATCATCAAGTCATTCAGATAAGGCGATCTTCTTATCACGATGTAGTGAGGGTTTCAGAAATCCAGAAAGTGTTGGACATAAGTGGAGTGCAGACATATGTAATCAACAGTGCTCGAGTTTTGTTCCTGAATGTGAGGCCTCAGCCAAAATCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGCGGAAGGAGCCTCTTGGACCCATTTCGGTTTTGTTCTTTGGGATGTAAGCTTGAAGGAATAAGGAAAAATGGGGATGCAAGCTTTGCTTTGGATGGTAGGAATGAAGAATTAACAATGGATACTTCAAGAGGATCAGTCTCATCAAGACAGCAAGAAGAAGAATTGCGTGAAGGTTCAACACAAGACATGTATCCAGCCACGCCTTCTCCATCTGCTTCAAATTCAAGGAGAAGAAAAGGCATACCTCATAGGGCACCTTTTGGCTCCTAA >Glyma19g37220.2 sequence type=CDS gene model=Glyma19g37220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTTATAGAATGTCCATTTTTCCAACAATGGGATTTAAGCTGCAGGAGGACACAGCTGTTCTGGTACCTCCTTGGCTTGAACAACTTCTTCACACACCTTTCTTCAACGTGTGTCGGATTCACGCAGAGGCCGCTAGAAGCGAGTGTAATATGTTTTGCCTACATTGCAATGGCGAAGCCTTTTGCTTTTATTGCAGTTCTTCAAGACACAAAGATCATCAAGTCATTCAGATAAGGCGATCTTCTTATCACGATGTAGTGAGGGTTTCAGAAATCCAGAAAGTGTTGGACATAAGTGGAGTGCAGACATATGTAATCAACAGTGCTCGAGTTTTGTTCCTGAATGTGAGGCCTCAGCCAAAATCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGCGGAAGGAGCCTCTTGGACCCATTTCGGTTTTGTTCTTTGGGATGTAAGCTTGAAGGAATAAGGAAAAATGGGGATGCAAGCTTTGCTTTGGATGGTAGGAATGAAGAATTAACAATGGATACTTCAAGAGGATCAGTCTCATCAAGACAGCAAGAAGAAGAATTGCGTGAAGGTTCAACACAAGACATGTATCCAGCCACGCCTTCTCCATCTGCTTCAAATTCAAGGAGAAGAAAAGGCATACCTCATAGGGCACCTTTTGGCTCCTAA
>Glyma19g37220.1 sequence type=predicted peptide gene model=Glyma19g37220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDTAVLVPPWLEQLLHTPFFNVCRIHAEAARSECNMFCLHCNGEAFCFYCSSSRHKDHQVIQIRRSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLEGIRKNGDASFALDGRNEELTMDTSRGSVSSRQQEEELREGSTQDMYPATPSPSASNSRRRKGIPHRAPFGS* >Glyma19g37220.2 sequence type=predicted peptide gene model=Glyma19g37220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFYRMSIFPTMGFKLQEDTAVLVPPWLEQLLHTPFFNVCRIHAEAARSECNMFCLHCNGEAFCFYCSSSRHKDHQVIQIRRSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLEGIRKNGDASFALDGRNEELTMDTSRGSVSSRQQEEELREGSTQDMYPATPSPSASNSRRRKGIPHRAPFGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
