Glyma19g37180 - SoyBase

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Report for Sequence Feature Glyma19g37180

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44391287
stop:	44394695
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g37180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36710	AT	Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein \| chr2:15389614-15391200 REVERSE LENGTH=407	SoyBase	E_val: 2.00E-158	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0030599	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity	SoyBase	N/A	ISS
PF01095	PFAM	Pectinesterase	JGI		ISS
UniRef100_I1NAE9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1NAE9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1NAE9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1NAE9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g37180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g37180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g187800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g37180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g37180

Limit To All Plant Sequences

>Glyma19g37180.1   sequence type=CDS   gene model=Glyma19g37180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTCAACAGAACCCTCTTTTGGCTTTCTGTCTTTGTAATTTTTCTCTTTTCTATCATATTTGTTCTTTATACCACGCCACCTTCCCCCGCTGCCAACACCGCCATTAGTCCTCAAGATAGCTTCAGTTTCCAGATTGGTATATTTAGTAAGATTATAAAGCTTAGTGGCGCTGAACACTTTATGTCTCTGATAACAAGTATAGCTAGGAGGAGACATCATCACCGGAGGAGTCATAAGGAAAAATGTGACAGGTCCAAATGGGATTCCAAGCTTATTCAAGACTATAATGTGAGTCTTGTTCTCACGGTTGACTTAAAGGGCTGTGCTAACTTCAGTAGCGTGCAGAAAGCTGTTGATGCTGTTCCTGAATCTAGTTCTGATACCACCCTTATCATAATCGATTCTGGCACATACAGAGAGAAGGTAGTGGTGCAGGCCAACAAAACAAACTTGATAGTTCAAGGTCAAGGGTATCTGAATACAACCATAGAATGGAACGACACCGCAAATTCCACCGGCGGTACTTCCTATAGCTACTCCTTCGCCGTCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAACACGGCTCCTCCACCGTCACCAGGAGTTGTTGGGGCACAAGCAGTGGCACTGAGGGTAACCGGTGATCAAGCAGCTTTCTATGGTTGTGGGTTTTATGGTGCGCAGGACACACTCAATGATGATGGTGGGAGACATTATTTTAAAGAATGCTTCATCCAAGGATCCATTGATTTCATATTTGGAAATGCTAGATCACTTTATGAGGATTGTACCATAAACTGTGTAGCAAAAGAAGAGAAGGATGGGATTAGCGGGTCGATCACCGCTCAAGGGAGACAATCGATGAATGAGGAAAGTGGATTTTCCTTTGTGAATTGCAGCATTGTTGGGAGTGGGAGAGTGTGGCTTGGAAGAGCATGGGGAGCCTATGCCACTGTGGTATTCTCAAGAACATACATGTCTGATGTCGTAGCTCCTGATGGATGGAATGATTGGAGAGATCCCTCTAGAGACCAGAGTGTCTTCTTTGGGGAGTACCGTTGTCTTGGACCTGGAGCAAATTATACATCCAGAGTCCCTTATGCCAAGCAACTCAGGGATTACGAAGCAAACTCCTACACGAATATTTCGTACATTGATGGAACTGATTGGCTTCTTGATTATTTTCAAAACTATGTTAACCCTTCATATATCTAA

Predicted protein sequences of Glyma19g37180

Limit To All Plant Sequences

>Glyma19g37180.1   sequence type=predicted peptide   gene model=Glyma19g37180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFNRTLFWLSVFVIFLFSIIFVLYTTPPSPAANTAISPQDSFSFQIGIFSKIIKLSGAEHFMSLITSIARRRHHHRRSHKEKCDRSKWDSKLIQDYNVSLVLTVDLKGCANFSSVQKAVDAVPESSSDTTLIIIDSGTYREKVVVQANKTNLIVQGQGYLNTTIEWNDTANSTGGTSYSYSFAVFASKFTAYNISFKNTAPPPSPGVVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDGGRHYFKECFIQGSIDFIFGNARSLYEDCTINCVAKEEKDGISGSITAQGRQSMNEESGFSFVNCSIVGSGRVWLGRAWGAYATVVFSRTYMSDVVAPDGWNDWRDPSRDQSVFFGEYRCLGPGANYTSRVPYAKQLRDYEANSYTNISYIDGTDWLLDYFQNYVNPSYI*

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