Glyma19g37060 - SoyBase

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Report for Sequence Feature Glyma19g37060

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44309829
stop:	44311894
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g37060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55500	AT	Annotation by Michelle Graham. TAIR10: expansin A16 \| chr3:20575073-20576102 REVERSE LENGTH=260	SoyBase	E_val: 7.00E-108	ISS
GO:0006949	GO-bp	Annotation by Michelle Graham. GO Biological Process: syncytium formation	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009828	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening	SoyBase	N/A	ISS
GO:0009831	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification involved in multidimensional cell growth	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
PF01357	PFAM	Pollen allergen	JGI		ISS
PF03330	PFAM	Rare lipoprotein A (RlpA)-like double-psi beta-barrel	JGI		ISS
UniRef100_G7JR43	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expansin n=1 Tax=Medicago truncatula RepID=G7JR43_MEDTR	SoyBase	E_val: 6.00E-141	ISS
UniRef100_I1NAD6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAD6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g37060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g37060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g186700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g37060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g37060

Limit To All Plant Sequences

>Glyma19g37060.1   sequence type=CDS   gene model=Glyma19g37060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTCCCTTTGGGAGCCCTCATGACCACCACACTATTGCTCTTTCTTGTTGCATTTTCACTAATTCCTAATGTCCATGCAACGATTAGGTCCTCATGGGGACATGCTGCTCATAACATGGTTGGAAGAGATAACAAGATAGTTGACCTCCACAAGCATCACCCCGTTTTTGGGCCTGGCCCTTGGAGGCAAGCTTATGCTACTTTCTATGAGGGAGGCTCTGGAACATTTGGAGGAGCTTGTGGGTATGATGATGTGGTTAAAGATGGTTATGGGCTTGACACGGCAGCATTGAGCTCAGTTTTGTTCAAGCACGGTGAGGCATGTGGGGCATGTTACGAGATCAAATGTGTAAACTCTACTCAATGGTGTAAGCCAAAACCCTCTGTTTTTGTGACAGCAACCAACCTTTGCCCCCCCAATTATTCTCAACCAGGTGACAATGGAGGATGGTGCAACCCTCCACGCCAGCACTTTGATTTAGCCAAACCTGCTTATCTCAAAATTGCACAGTACAAGGCTGGCATCGTCCCAGTCCAATATCGCAGGGTACCATGCAAGAAGCAAGGGGGTATTCGGTTCACAATCACTGGGAATCCTTACTTCAACCTAGTAAAAGTGTGGAATGTGGGAGGAGCTGGGGACATCACAGAAGTACAGGTGAAGGGTGACAAGAAGCTGATCAATTGGACAAATTTGAAGCGAAATTGGGGTGAGAAATGGGAGACTAATGCCATGTTAGTGGGAGAGACATTGACTTTTAGGGTTAAAGCCAGTGATGGCAGGTACTCTACCTCTTCCAGTGTTGCCCCCAAGAATTGGCAGTTTGGTCAAACCTTTGAAGGCAAAAACTTCCCATAA

Predicted protein sequences of Glyma19g37060

Limit To All Plant Sequences

>Glyma19g37060.1   sequence type=predicted peptide   gene model=Glyma19g37060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFPLGALMTTTLLLFLVAFSLIPNVHATIRSSWGHAAHNMVGRDNKIVDLHKHHPVFGPGPWRQAYATFYEGGSGTFGGACGYDDVVKDGYGLDTAALSSVLFKHGEACGACYEIKCVNSTQWCKPKPSVFVTATNLCPPNYSQPGDNGGWCNPPRQHFDLAKPAYLKIAQYKAGIVPVQYRRVPCKKQGGIRFTITGNPYFNLVKVWNVGGAGDITEVQVKGDKKLINWTNLKRNWGEKWETNAMLVGETLTFRVKASDGRYSTSSSVAPKNWQFGQTFEGKNFP*

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