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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G21540 | AT | Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr3:7586100-7590856 REVERSE LENGTH=955 | SoyBase | E_val: 0 | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005834 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG0306 | KOG | WD40-repeat-containing subunit of the 18S rRNA processing complex | JGI | ISS | |
| PTHR19853 | Panther | WD REPEAT CONTAINING PROTEIN 3 (WDR3) | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF04003 | PFAM | Dip2/Utp12 Family | JGI | ISS | |
| UniRef100_B9S0D0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9S0D0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F480 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F480 related cluster n=1 Tax=unknown RepID=UPI000233F480 | SoyBase | E_val: 0 | ISS |
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Glyma19g37051 not represented in the dataset |
Glyma19g37051 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g34360 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g186600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g37051.1 sequence type=CDS gene model=Glyma19g37051 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAAGGCCTACCTCCGATACGAGCCGGCGGCGTCGTTTGGGGTGATAGCGTCGGTGGATTCCAACATTTCATACGACAGCTCCGGCAAACACCTCCTCTCTCCGGCACTCGAGAAAATTGGCGTCTGGCACGTGCGGCAGGGCCTCTGCACCAAAACCCTAACTCCTTCCTCTTCGTCGCGCGGTCCTTCTCCCTCCGTCACCTCCATTGCCTCCTCCCCTTCCTCCCTGATTGCTGGTGGTTACGGTGATGGTAGCATAAGGATTTGGGACTCCGATAAAGGAACGTGCGAGACTACGTTGAATGGACACAAGGGAGCTGTCACTACTCTTCGTTACAACAAGGCTGGCTCCTTGCTCGCCTCTGGTAGCAGGGATAATGATGTCATTTTGTGGGATGTGGTTGGCGAGACTGGGCTCTTTCGCCTTCGCGGCCACCGCGATCAGGTGACTGATGTTGTTTTCATGAGTTCTGGGAAAAAGCTTGTTAGTTCCTCCAAAGACAAGTTCTTGAGAGTGTGGGATATTGATACCCAGCACTGTATGCAAATTGTTGGTGGCCATCATAGTGAAATATGGTCCCTAGATGTTGATCTGGATGAAAGATATCTGGTCACTGGTTCTGCGGATAATGAACTTCGTTTTTATGCCATCAAGCATGAGTCTGTGGATGGGGAGTCTGTAAATGGCGGTGAAGAATCTTCTGTTCAAAACAAATGGGAAGTGTTGAGGCATTTTGGTGAAATTCAGCGGCAAAGTAAGGATAGAGTTGCAACGGTCCAGTTCAACAAGTCTGGAAGTCTGCTAGCTTGCCAAGTTGCTGGAAAGACGGTAGAAATATACCGCATATTGGATGATGCTGAAGCAAAGCGCAAAGCAAAACGAAGGGTTCACCGTAAGAAAGAGAAGAAACATAGTAAAGAAGCTTTGGAAGGAATAGAAAATGGAGACAGGAATAATGAGAACAAAGGAGACGATTCTTCTGTCACTCATGGGCCCATGGAAACAAGTAACCCCACAGTTACTGTGGCTGATGTTTTTAAGCTGTTGCATACTATCAGAGCTGGCAAAAAGATATGCTCTATTTCTTTCTGTCCAGTCACTCCGAAGAATTCACTGGCTAGTTTAGCGTTGTCCCTGAACAATAATCTACTTGAGTTTTACTCCATTGAACAAGGGGAAACCAAAAAAACACTTGCTATTGATCTCCAAGGGCACCGTTCTGATGTTAGAAGTGTCACGCTTAGTTCAGACAACACTTTTCTGATGTCAACCAGTCACAATGCTATAAAGATTTGGAACCCAAGTACTGGCTCTTGCCTAAGGACCATTGATTCTGGGTATGGACTGTGCAGTTTAATTCTTCCCACCAACAAGTATGGACTTGTTGGAACTAAAGATGGAACCATAGAAATTATTGACATTGGAAGTGGTACTTGTGTTGAAGTAATGGAAGCTCATGGTGGTTCCGTTCGCTCAATTGCTGCCCTTCCACATAAAAATGGTTTTGTCACAGGAAGTGCAGATCATGATGTGAAGTTTTGGGAGTACCAAATTAAGCAAAAACCCGGTCAAGCTGCTAAGCAACTCACAGTGTCAAATGTCAGTACCATGAAAATGAATGATGATGCTCTTGTGGTTGCAATTAGCCCTGATGCTAAATATATTGCTGTTGCTCTCTTGGATAGTACTGTGAAGGTTCACTTTGCAGACACATTCAAATTCTTCCTTTCATTATATGGCCACAAGCTGCCTGTTCTGTGTATGGATATCTCATCAGATGGAGATTTAATTGTAACCGGCTCTGCAGATAAAAATATAAAGATCTGGGGTTTGGACTTTGGTGACTGTCATAAATCCATCTTTGCGCATGCTGACAGTGTTATGGCAGTGCAATTTGTTCCCAAGACACATTATGTGTTCAGTGTTGGGAAAGATCGCCTAGTAAAATATTGGGATGCCGATAAATTTGAGCTGCTCTTGACACTTGAAGGACATCATGCTGATATTTGGTGTCTTGCAGTCAGTAATCGTGGTGATTTTATCGTCACTGGATCTCATGATCGTTCTATCCGCCTCTGGGATCGCACTGAAGAGCAGTTTTTCATTGAGGAAGAAAAGGAGAAAAGGTTGGAGGAAATGTTTGAGGCTGATATTGACAATGCATTTGAAAACAAGTATGTGTCAAAGGAAGAAATACCAGAAGAGGGAGCTGTGGCTTTAGCTGGGAAACAAACCCAGGAAACCCTTTCTGCAACTGACTTAATTATTGAGAGATTAGACATTGCAGAAGCTGAAGAAAAGCGTATTGCAGAACATCAGGAGGAGAAAAATAACAGAAATGTTGCTGTTTTCCAAGCAAATCCGCTTATGAATGGGCTTTCACCTTCTGACTATGTTCTAAGTGCATTTTCAGATGTTCACTCCAATGATTTGGAGCAAACATTATTGGCTTTACCATTTTCAGATGCTTTGAAGCTTCTGTCGTACTTGAAAGACTGGACTTCATACTCTGATAAGGTTGAGCTTGTTTGCAGAATAGGTACGCTGCTGTTGCAGACACATTACAACCAGCTTCTTACCACGCCAGCTGCCCGACCTATCTTGACTGTTTTCAGTGACATTTTTCATGAAAGGGTCAAGGGATGGAAAGACATCTTTGGTTTTAACCTTGCCGCCATGGATCATATTCAGCAAATGATGGCTTCAAGATCAGATGCTCTTTTTCATGATGCAAGATCAAAACTGCTAGAGATACGTGCTCGACAATCCAAACGTTTAGAAGAAAGGTCTGATACTGGGGAAGTGAAACGGAAGAAGAAGAAGACATAA
>Glyma19g37051.1 sequence type=predicted peptide gene model=Glyma19g37051 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVKAYLRYEPAASFGVIASVDSNISYDSSGKHLLSPALEKIGVWHVRQGLCTKTLTPSSSSRGPSPSVTSIASSPSSLIAGGYGDGSIRIWDSDKGTCETTLNGHKGAVTTLRYNKAGSLLASGSRDNDVILWDVVGETGLFRLRGHRDQVTDVVFMSSGKKLVSSSKDKFLRVWDIDTQHCMQIVGGHHSEIWSLDVDLDERYLVTGSADNELRFYAIKHESVDGESVNGGEESSVQNKWEVLRHFGEIQRQSKDRVATVQFNKSGSLLACQVAGKTVEIYRILDDAEAKRKAKRRVHRKKEKKHSKEALEGIENGDRNNENKGDDSSVTHGPMETSNPTVTVADVFKLLHTIRAGKKICSISFCPVTPKNSLASLALSLNNNLLEFYSIEQGETKKTLAIDLQGHRSDVRSVTLSSDNTFLMSTSHNAIKIWNPSTGSCLRTIDSGYGLCSLILPTNKYGLVGTKDGTIEIIDIGSGTCVEVMEAHGGSVRSIAALPHKNGFVTGSADHDVKFWEYQIKQKPGQAAKQLTVSNVSTMKMNDDALVVAISPDAKYIAVALLDSTVKVHFADTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNIKIWGLDFGDCHKSIFAHADSVMAVQFVPKTHYVFSVGKDRLVKYWDADKFELLLTLEGHHADIWCLAVSNRGDFIVTGSHDRSIRLWDRTEEQFFIEEEKEKRLEEMFEADIDNAFENKYVSKEEIPEEGAVALAGKQTQETLSATDLIIERLDIAEAEEKRIAEHQEEKNNRNVAVFQANPLMNGLSPSDYVLSAFSDVHSNDLEQTLLALPFSDALKLLSYLKDWTSYSDKVELVCRIGTLLLQTHYNQLLTTPAARPILTVFSDIFHERVKGWKDIFGFNLAAMDHIQQMMASRSDALFHDARSKLLEIRARQSKRLEERSDTGEVKRKKKKT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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