Glyma19g36950 - SoyBase

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Report for Sequence Feature Glyma19g36950

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44222469
stop:	44228495
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g36950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09880	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2A regulatory B subunit family protein \| chr3:3029902-3031931 FORWARD LENGTH=499	SoyBase	E_val: 0	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0000159	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein phosphatase type 2A complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG2085	KOG	Serine/threonine protein phosphatase 2A, regulatory subunit	JGI		ISS
PTHR10257	Panther	PROTEIN PHOSPHATASE 2A, REGULATORY SUBUNIT	JGI		ISS
PF01603	PFAM	Protein phosphatase 2A regulatory B subunit (B56 family)	JGI		ISS
UniRef100_B9S0E4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2a, regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9S0E4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1NAC5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAC5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g36950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36950

Paralog	Evidence	Comments
Glyma03g34240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g185700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g36950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g36950

Limit To All Plant Sequences

>Glyma19g36950.1   sequence type=CDS   gene model=Glyma19g36950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAAGCGCATCATGAAGGGAGGGCAGAAGAAGCCCTCCAAGACGGACCCGAGCGATCCGTCGCCCTTCGCTCCGGCGGCGGCAGCCGCTCCGGCGCTGGTAGTTCCTCAGCCGTCGGGCACCATAGAGCCCCTCCCGCTCTTCCGCGACGTGGCGGTCTCGGAGCGGCAGAACCTCTTCATCCGAAAGCTCCATATATGCTGCCACGTCTTGGACTTCTCCGACACGCTGAAATCCGTTCGGGAGAAGGAAATCAAGAGACAGACATTGATGGAGCTCGTGGATTTCATCCAATCGGGGTCGGGGAAGATAACGGAGACTTGCCAGGAAGAGATGATCAAAATGGTGTCGGCGAACATTTTTCGGTGCCTCCCGCCGGCGTCGCACGAGAACACCGGCCAGGAAGCCACGGATCCGGAGGAGGAGGAGCCGTGCCTCGAACCGGCGTGGCCGCACTTGCAACTCGTCTACGAGCTTCTCCTCAGATACGTGGTTTCCTCCGACACTGACACAAAGGTTGCAAAACGGTATATCGATCATTCTTTTGTTCTCAAACTCCTTGATTTGTTTGACTCTGAGGACCCTCGTGAGCGTGAGTATTTGAAAACCATATTGCATCGTGTGTACGGGAAATTCATGGTGCATCGTCCCTTCATTAGGAAGGCCATTAACAACATATTTTTTCGGTTTATATATGAGACGGAGCGGCATAGTGGTATTGGGGAGCTTCTCGAGATTCTGGGAAGTATTATTAATGGGTTTGCCCTGCCCATGAAGGAGGAGCATAAGTTGTTTCTTGCGAGGGCGCTTCTGCCTCTGCATAAGCCCAAGCCGGTTGGGGTGTACCACCAGCAGTTGTCGTATTGCATTGCACAGTTTGTGGAGAAGGATTACAAGCTCTCGGATACGGTTATTAGGGGCTTGTTGAAGTATTGGCCTGTCACTAATTGCCAGAAGGAGGTTCTCTTCCTTGGGGAACTGGAGGAGGTGCTGGAGGCCACACAGACCGCAGAGTTCCAACGTTGCATGGTCCCTCTTTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAGGTTGCAGAACGGGCACTCTTTTTGTGGAATAATGAGCATATTGTCAGCTTAATTGCCCAAAACAGGACTGTAGTATTACCCATAATATTTGAAGCATTGGAGAAAAATATCAAGAGTCATTGGAACCAGGCTGTTCACGGCTTGACTGTGAATGTTCGGAAAATGTTTGTAGAAATGGATGCAGAATTGTTTGAAGAGTGTCAGAGGCAGTTTGAAGAGAGGGAGGCTAAAGCAAAAGAATTAGAAGTGCAGAGGGAATTGAATTGGAAAAGACTGGCAGAGGCAGCTTCACAGAATGGGGTGGATATGGTCACAGCTTAG

Predicted protein sequences of Glyma19g36950

Limit To All Plant Sequences

>Glyma19g36950.1   sequence type=predicted peptide   gene model=Glyma19g36950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFKRIMKGGQKKPSKTDPSDPSPFAPAAAAAPALVVPQPSGTIEPLPLFRDVAVSERQNLFIRKLHICCHVLDFSDTLKSVREKEIKRQTLMELVDFIQSGSGKITETCQEEMIKMVSANIFRCLPPASHENTGQEATDPEEEEPCLEPAWPHLQLVYELLLRYVVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRVYGKFMVHRPFIRKAINNIFFRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLARALLPLHKPKPVGVYHQQLSYCIAQFVEKDYKLSDTVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQTAEFQRCMVPLFRQVARCLNSSHFQVAERALFLWNNEHIVSLIAQNRTVVLPIIFEALEKNIKSHWNQAVHGLTVNVRKMFVEMDAELFEECQRQFEEREAKAKELEVQRELNWKRLAEAASQNGVDMVTA*

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