Glyma19g36940 - SoyBase

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Report for Sequence Feature Glyma19g36940

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44211016
stop:	44214510
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g36940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39210	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr2:16366287-16368231 REVERSE LENGTH=601	SoyBase	E_val: 0	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0043090	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid import	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21576	Panther	UNCHARACTERIZED NODULIN-LIKE PROTEIN	JGI		ISS
PTHR21576:SF8	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF06813	PFAM	Nodulin-like	JGI		ISS
PF07690	PFAM	Major Facilitator Superfamily	JGI		ISS
UniRef100_G7ZZA4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nitrate and chloride transporter n=1 Tax=Medicago truncatula RepID=G7ZZA4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F47D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F47D related cluster n=1 Tax=unknown RepID=UPI000233F47D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g36940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36940

Paralog	Evidence	Comments
Glyma03g34230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g185600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g36940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g36940

Limit To All Plant Sequences

>Glyma19g36940.2   sequence type=CDS   gene model=Glyma19g36940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGCTGAAATACGTGAGTCTCACATGGGGCTTGACTTACATTGGCCTACCAAAAACAAATTGTCTCACTATTTTGTTACCCGGTGCAGCATTAGACAGGATCCGAATTTAGGTATTGTTACAAATCAGCATCACTTCAGCACCCTATATCCACACAAGCACAAAAAAAAAGTGTCTGGTCCCAAAATACAACAAGAGTGTAAAATGGTGGTGGCAGAGTTCACTAGTGGTGGCTTGAGGGGAATGAAGGCCTTCAGCTACCATGTTCTCACGGGGCGTTGGTTCATGCTATTTGCATCTTTACTCATCATGTCCGTTGCAGGGGCAACCTACATGTTTGGAATATACTCTAACGAGGTCAAAACCTCATTAGGGTACGACCAATCCACTCTCAACTTGCTAAGCTTCTTCAAAGACCTAGGTGCCAACGTTGGAGTCATATCCGGGTTGGTCAACGAGGTAACACCACCCTTTGTGGTACTCTCAATTGGGGTCATCATGAACTTCTTCGGCTACTTCATGATATTTCTTGCTGTCTCTGGGCGCATTGCCAAACCCCAAGTGTGGCAAATGTGTCTCTACATTTGCATTGGTGCAAATTCTCAAACTTTTGCCAACACTGGTGCTTTGGTCACGTGTGTCAAAAACTTCCCTGGAAGCCGTGGCAGTATCTTAGGCCTACTCAAAGGCTACGTTGGTCTAAGTGGTGCCATCATCACACAGCTTTACCATGCTTTCTATGGTAATCATAACTCTCAAGCTCTTATCTTACTCATTGCTTGGCTCCCTGCTGCTGTTTCCTCCCTTTTTCTTCCAACAATTCGGATAATGAACACAGTACTGCACCAACCCAAGGAGGGCAACAGAGTTTTCTACCACCTTCTATATATTTCACTTGGCCTTGCTGCTTTTCTCATGGTTCTGATCCTTGTACAAAACAAGCTTAGTTTTTCAAGGATTGAATACATAGTAGATGGCCTTGTGGTTTTCTTCTTTCTTCTTCTCCCACTTGTTGTGGTGTTTAGAGAGGAGATAAACCAATTGAAAGCAAATACTCAATGTTTGACCGATTCACCACCCCAGTTGAAAGTAGTCACTGAAGCTATTCCACCACCAAACGTGGAGCAAGAAGAAGTACCACCAACTACCACAAGTTCCCACGAGAAAAGTTCTTGTTTAAGGAACATATTCAACCCTCCAAAGAGGGGAGAAGACTACACCATTTTGCAAGCACTTTTCAGTATTGACATGCTGATTTTGTTCATTGCAACAACGTTTGGTGCTGGAGGAACATTAACAGCCATAGACAACCTGGGACAGATTGGACACTCATTAGGATACCCGAACAAAAGCACAACAACCTTTGTGTCCTTAGTGAGCATATGGAACTACTTGGGAAGAGTAGCTTCAGGTTATGCCTCTGAGATCTTCTTGACCAAATACAAAATCCCTCGTCCCTACATGCTCACTCTAGTTTTGCTTGTCTCTTGTGTTGGCCATGTTCTGATAGCCCTCGGTGTCCCAAACTCCCTCTACTTCGCTTCGGTGATTATAGGGTTTTGTTTTGGAGCTCAATGGCCACTAATGTTTGCAATCATATCAGAAGTTTTTGGCCTCAAATACTACTCCACGTTGTACAACTTTGGAGCCGCGGCAAGCCCTCTTGGGTCTTACATTCTGAACGTGAAAGTGGCTGGTGTTTTGTATGATAAAGAGGCTTTGAAACAGTTGAAGGCGAAAGGACTCACTAGAGAAGAAGGGAAGGACCTAACTTGCGTGGGAGTGCAATGCTATAAAATGGCTTTTATCATAATCACGGCTTCAACGTTGGTTGGTTGTTTAGCTTCGGTCATTTTGGCGCTGAGGACTAGAAAGTTTTACAAAGGGGATATCTATAGAAAATTTAGAATGGAACATGAAGCAATGGAGATTACCAAGACTGCTAATTAA

Predicted protein sequences of Glyma19g36940

Limit To All Plant Sequences

>Glyma19g36940.2   sequence type=predicted peptide   gene model=Glyma19g36940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTAEIRESHMGLDLHWPTKNKLSHYFVTRCSIRQDPNLGIVTNQHHFSTLYPHKHKKKVSGPKIQQECKMVVAEFTSGGLRGMKAFSYHVLTGRWFMLFASLLIMSVAGATYMFGIYSNEVKTSLGYDQSTLNLLSFFKDLGANVGVISGLVNEVTPPFVVLSIGVIMNFFGYFMIFLAVSGRIAKPQVWQMCLYICIGANSQTFANTGALVTCVKNFPGSRGSILGLLKGYVGLSGAIITQLYHAFYGNHNSQALILLIAWLPAAVSSLFLPTIRIMNTVLHQPKEGNRVFYHLLYISLGLAAFLMVLILVQNKLSFSRIEYIVDGLVVFFFLLLPLVVVFREEINQLKANTQCLTDSPPQLKVVTEAIPPPNVEQEEVPPTTTSSHEKSSCLRNIFNPPKRGEDYTILQALFSIDMLILFIATTFGAGGTLTAIDNLGQIGHSLGYPNKSTTTFVSLVSIWNYLGRVASGYASEIFLTKYKIPRPYMLTLVLLVSCVGHVLIALGVPNSLYFASVIIGFCFGAQWPLMFAIISEVFGLKYYSTLYNFGAAASPLGSYILNVKVAGVLYDKEALKQLKAKGLTREEGKDLTCVGVQCYKMAFIIITASTLVGCLASVILALRTRKFYKGDIYRKFRMEHEAMEITKTAN*

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