Glyma19g36910 - SoyBase

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Report for Sequence Feature Glyma19g36910

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44187879
stop:	44191377
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g36910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36840	AT	Annotation by Michelle Graham. TAIR10: ACT-like superfamily protein \| chr2:15451834-15453550 REVERSE LENGTH=410	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016597	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid binding	SoyBase	N/A	ISS
PF01842	PFAM	ACT domain	JGI		ISS
UniRef100_B9S0G4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S0G4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1NAC0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAC0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g36910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36910

Paralog	Evidence	Comments
Glyma03g34210	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g185300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g36910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g36910

Limit To All Plant Sequences

>Glyma19g36910.2   sequence type=transcript   gene model=Glyma19g36910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTATTAATATAAAATATTCACTAGTTTTATTATAACTAATTTGATTGATAACTTTAGTGAATCTCCCTCCAACCTCGTTCATCCAAAGCTCAAGCAGGAAATTTTTATTTAAAGATAATGAAATCACTTGCCACTCGCACTAACGATTTTTTAGTGAGGGAGTGTAATTTGAACACACTGAAAAGGCGATGGATGTAAATTCACTTATTTGATTTTCCATTAGCACTAGCTCTCAAAACCAAGACCGAAACAGTGACAAGGCAAGTTCCATTCCGTTGCGCCGTGTTTTGTTTCTCTCTCGTTTCAGTTCTGTAGTAGAATCAAGTAGCATAGAAAGAACGAAAGAAGAAGGATTATGGGGATTCTGCACGACGACGTAGTGATAATCGGAGAGGCAGAGAAAGAAGGTAAAGCAACCGTCATAACCGTCAATTGCCCCGACAAGACCGGTCTAGGTTGTGATTTGTGTCGCATCATTCTCTTCTTCGGTCTTAGCATTGTCCGAGGAGACGTGTCCACCGACGGAAAATGGTGCTACATAGTATTCTGGGTGGTGGGGAAGCAAAGGGCGAGGTGGAGTTTGCTGAAGAAGAGGCTAATTGAGGCGTGCCCTTCTTGTTCTTCTGCTTCTGGAATCTCCTATTACCGTTCTGAATTGCAGCCTCCTAAACCCCCTGATGTATTCCTTTTGAAATTTTGTTGCCACGATCGTAAAGGCCTTTTACATGATGTTACAGAGGTTCTTAGTGAGCTAGAGCTCATCATACACAAAGTGAAGGTGTCTACTACACCTGATGGCAAAGTGGTGGATCTGTTTTTCATCACGGATACCAGGGAACTTCTACATACAAAGAAGAGAAGGGATGACACAATTGAACAGTTGTCAGCTATTTTGGGGGATCCCTTAATTACCATTGACATTGAATTGGTTGGCCCAGAAATTGCTGCTTGTTCTCAAGCATCTTCATTCCTTCCAAGTGCCATGACAGAAGATATGTTTGATTTGGAATTACCTGGTTCAATACAAAGTGGAACTTCCACATCAGATTCTGTTTCTATTACGATGGACAATTCACTGAGTCCTGCTCACACGCTTGTCCAAATTATATGTCAAGATCACAAAGGTCTTCTTTATGACATCATGAGAACTCTGAAGGACTACAATATTCAGATTTCTTATGGGAGATTCTCAACAAAACCCAGAGGAAAATGCGAGCTTGACTTGTTCATTATGCAAGCAGATGGGAAAAAGATAGTTAACCCCAGCAAGCAGAAGTCTTTGTCATCACGCCTTAGGATGGAACTACTTCGTCCGCTCAGAGTAACTGTTGTAAGCAGGGGTCCTGATACAGAGCTGCTGGTTGCAAACCCTGTGGAGTTATCAGGCAAAGGACGACCTCTTGTTTTTTATGATATTACTCATGCTCTCAAAATGCTTGGCCCTTGCATATTTTCGGTACTTACTGATCTGATCACTATGTTACTTCCTACTGTTTATTTTCACACTTAATTTTTCAGTGGTCATATTCTCCCCTGGGAGACTAGCTCAATATGAATTTTCACACTGTTTCCTTCTCCCAATTTCTAGAATTATGTTCACAAAATTAGATAGGGGCAGAATGAAGCAGAGATACTGAGAATGATCATTTGCAGCATGTCATTTTTTTTTGTTTCAACAGGCTGAAGTTGGAAGACATGTGGTTGGAGATCGCGAGTGGGAAGTTTATAGAATCTTGCTTGATGAAGGGGATGGTTTATCTGTTCCAAGGAACAAGATTGAGAAAGGAGTTTGGAAGATGTTGATGGGTTGGGAGTGATCCATGGCTGGTGGCATTGTTCATCTTGGATGAACCTGTGCTCGTGTACAGATAACATGGTTATCATGTAGTTATGATATGTAACTTGTAATTATGAAATGTTATATTGTGCAGATGGTGATCTTTGCCACGCTATATTTTTGAGAGCTTTTGCAATTTTAACCTAGTGTAGAAAGAAGGGCAGTAACAACTAGCAAGTACAGGAAAAAAAAAGGAGAAAGGCAGGCAGATTATTTAGAGTATTTTATGAACGAAAATGAATTATTGTAAAATGTTAATATTCAGTTCTTTCATACTATATATAAACTTTTTATTGGTTGCATCCTACTTGAAAATGAAAAGCATCATTACAATCTGACAGTGTGGAAGCAGTGACACGTTTAAAGGAATTCAAACAGGTTGACACGAGGTTGTCTGTGGATTTATGGAATGAAAGGCTCTTTATGG

Coding sequences of Glyma19g36910

Limit To All Plant Sequences

>Glyma19g36910.1   sequence type=CDS   gene model=Glyma19g36910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATTCTGCACGACGACGTAGTGATAATCGGAGAGGCAGAGAAAGAAGGTAAAGCAACCGTCATAACCGTCAATTGCCCCGACAAGACCGGTCTAGGTTGTGATTTGTGTCGCATCATTCTCTTCTTCGGTCTTAGCATTGTCCGAGGAGACGTGTCCACCGACGGAAAATGGTGCTACATAGTATTCTGGGTGGTGGGGAAGCAAAGGGCGAGGTGGAGTTTGCTGAAGAAGAGGCTAATTGAGGCGTGCCCTTCTTGTTCTTCTGCTTCTGGAATCTCCTATTACCGTTCTGAATTGCAGCCTCCTAAACCCCCTGATGTATTCCTTTTGAAATTTTGTTGCCACGATCGTAAAGGCCTTTTACATGATGTTACAGAGGTTCTTAGTGAGCTAGAGCTCATCATACACAAAGTGAAGGTGTCTACTACACCTGATGGCAAAGTGGTGGATCTGTTTTTCATCACGGATACCAGGGAACTTCTACATACAAAGAAGAGAAGGGATGACACAATTGAACAGTTGTCAGCTATTTTGGGGGATCCCTTAATTACCATTGACATTGAATTGGTTGGCCCAGAAATTGCTGCTTGTTCTCAAGCATCTTCATTCCTTCCAAGTGCCATGACAGAAGATATGTTTGATTTGGAATTACCTGGTTCAATACAAAGTGGAACTTCCACATCAGATTCTGTTTCTATTACGATGGACAATTCACTGAGTCCTGCTCACACGCTTGTCCAAATTATATGTCAAGATCACAAAGGTCTTCTTTATGACATCATGAGAACTCTGAAGGACTACAATATTCAGATTTCTTATGGGAGATTCTCAACAAAACCCAGAGGAAAATGCGAGCTTGACTTGTTCATTATGCAAGCAGATGGGAAAAAGATAGTTAACCCCAGCAAGCAGAAGTCTTTGTCATCACGCCTTAGGATGGAACTACTTCGTCCGCTCAGAGTAACTGTTGTAAGCAGGGGTCCTGATACAGAGCTGCTGGTTGCAAACCCTGTGGAGTTATCAGGCAAAGGACGACCTCTTGTTTTTTATGATATTACTCATGCTCTCAAAATGCTTGGCCCTTGCATATTTTCGGCTGAAGTTGGAAGACATGTGGTTGGAGATCGCGAGTGGGAAGTTTATAGAATCTTGCTTGATGAAGGGGATGGTTTATCTGTTCCAAGGAACAAGATTGAGAAAGGAGTTTGGAAGATGTTGATGGGTTGGGAGTGA

>Glyma19g36910.2   sequence type=CDS   gene model=Glyma19g36910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGATTCTGCACGACGACGTAGTGATAATCGGAGAGGCAGAGAAAGAAGGTAAAGCAACCGTCATAACCGTCAATTGCCCCGACAAGACCGGTCTAGGTTGTGATTTGTGTCGCATCATTCTCTTCTTCGGTCTTAGCATTGTCCGAGGAGACGTGTCCACCGACGGAAAATGGTGCTACATAGTATTCTGGGTGGTGGGGAAGCAAAGGGCGAGGTGGAGTTTGCTGAAGAAGAGGCTAATTGAGGCGTGCCCTTCTTGTTCTTCTGCTTCTGGAATCTCCTATTACCGTTCTGAATTGCAGCCTCCTAAACCCCCTGATGTATTCCTTTTGAAATTTTGTTGCCACGATCGTAAAGGCCTTTTACATGATGTTACAGAGGTTCTTAGTGAGCTAGAGCTCATCATACACAAAGTGAAGGTGTCTACTACACCTGATGGCAAAGTGGTGGATCTGTTTTTCATCACGGATACCAGGGAACTTCTACATACAAAGAAGAGAAGGGATGACACAATTGAACAGTTGTCAGCTATTTTGGGGGATCCCTTAATTACCATTGACATTGAATTGGTTGGCCCAGAAATTGCTGCTTGTTCTCAAGCATCTTCATTCCTTCCAAGTGCCATGACAGAAGATATGTTTGATTTGGAATTACCTGGTTCAATACAAAGTGGAACTTCCACATCAGATTCTGTTTCTATTACGATGGACAATTCACTGAGTCCTGCTCACACGCTTGTCCAAATTATATGTCAAGATCACAAAGGTCTTCTTTATGACATCATGAGAACTCTGAAGGACTACAATATTCAGATTTCTTATGGGAGATTCTCAACAAAACCCAGAGGAAAATGCGAGCTTGACTTGTTCATTATGCAAGCAGATGGGAAAAAGATAGTTAACCCCAGCAAGCAGAAGTCTTTGTCATCACGCCTTAGGATGGAACTACTTCGTCCGCTCAGAGTAACTGTTGTAAGCAGGGGTCCTGATACAGAGCTGCTGGTTGCAAACCCTGTGGAGTTATCAGGCAAAGGACGACCTCTTGTTTTTTATGATATTACTCATGCTCTCAAAATGCTTGGCCCTTGCATATTTTCGGTACTTACTGATCTGATCACTATGTTACTTCCTACTGTTTATTTTCACACTTAA

Predicted protein sequences of Glyma19g36910

Limit To All Plant Sequences

>Glyma19g36910.1   sequence type=predicted peptide   gene model=Glyma19g36910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGILHDDVVIIGEAEKEGKATVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVVGKQRARWSLLKKRLIEACPSCSSASGISYYRSELQPPKPPDVFLLKFCCHDRKGLLHDVTEVLSELELIIHKVKVSTTPDGKVVDLFFITDTRELLHTKKRRDDTIEQLSAILGDPLITIDIELVGPEIAACSQASSFLPSAMTEDMFDLELPGSIQSGTSTSDSVSITMDNSLSPAHTLVQIICQDHKGLLYDIMRTLKDYNIQISYGRFSTKPRGKCELDLFIMQADGKKIVNPSKQKSLSSRLRMELLRPLRVTVVSRGPDTELLVANPVELSGKGRPLVFYDITHALKMLGPCIFSAEVGRHVVGDREWEVYRILLDEGDGLSVPRNKIEKGVWKMLMGWE*

>Glyma19g36910.2   sequence type=predicted peptide   gene model=Glyma19g36910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGILHDDVVIIGEAEKEGKATVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFWVVGKQRARWSLLKKRLIEACPSCSSASGISYYRSELQPPKPPDVFLLKFCCHDRKGLLHDVTEVLSELELIIHKVKVSTTPDGKVVDLFFITDTRELLHTKKRRDDTIEQLSAILGDPLITIDIELVGPEIAACSQASSFLPSAMTEDMFDLELPGSIQSGTSTSDSVSITMDNSLSPAHTLVQIICQDHKGLLYDIMRTLKDYNIQISYGRFSTKPRGKCELDLFIMQADGKKIVNPSKQKSLSSRLRMELLRPLRVTVVSRGPDTELLVANPVELSGKGRPLVFYDITHALKMLGPCIFSVLTDLITMLLPTVYFHT*

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