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Report for Sequence Feature Glyma19g36881

Feature Type:gene_model
Chromosome:Gm19
Start:44161943
stop:44163914
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g36881
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03450AT Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr5:858954-862238 REVERSE LENGTH=630 SoyBaseE_val: 4.00E-58ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR16047Panther RFWD3 PROTEIN JGI ISS
PTHR16047:SF7Panther RFWD3 PROTEIN-RELATED JGI ISS
UniRef100_G7L3X6UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING finger and WD repeat domain-containing protein n=1 Tax=Medicago truncatula RepID=G7L3X6_MEDTR SoyBaseE_val: 6.00E-70ISS
UniRef100_I1NAB7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1NAB7_SOYBN SoyBaseE_val: 2.00E-109ISS

Expression Patterns of Glyma19g36881
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g36881 not represented in the dataset
Glyma19g36881 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36881
ParalogEvidenceComments
Glyma03g34180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36881 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g36881
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g36881
>Glyma19g36881.1   sequence type=CDS   gene model=Glyma19g36881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATTTCGAATCAAATTTTATTAATTGCTCAAAAGCGAGAGGCAGTAGGTGGAATGCCCTTGCTAACTAAAATGAGCTTGATGTCTCCATTTGAGATGCAAGGCATGTTACTGCCGTCTGGCACAAGTGGTGTTAAAGACCTATATATTTCTCCTTCTCATAGTAGCTTGGCCCTCTTTGCTTCTCTAGGGAAGAAATTATCAGTGCTCAGAATTGTATTCCAGGTTCCTGCATGGTCTTGTTCATGGGATCTCAACAATTCACATTACATATATGCTGGACTACAGAATGGTTGTGTCTTGGTGTTTGATATGTGCCAAACTGCAGGACCCATGAAATCTTTAGTTGGTTTGACTAGGAATCCTGTGCATACTGTACATTCTCTTTCACAAACTTCAAGTTTGTCTTCTGGTGTTAAAACCATCCTATCTGCATCTGCCATTGACCTTTGTCAGTGGAACATTGATTCTGAAGAGCGGCCGCTTATGGTTCCTGAAACTGATAATCAAGGAGTTTGTTGCAAGCTTGTTGTAGTTTGTAGCTACAATAAGCCTAGAAATAAAAACACGTACAATTTTAGCTTCTAA
Predicted protein sequences of Glyma19g36881
>Glyma19g36881.1   sequence type=predicted peptide   gene model=Glyma19g36881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDISNQILLIAQKREAVGGMPLLTKMSLMSPFEMQGMLLPSGTSGVKDLYISPSHSSLALFASLGKKLSVLRIVFQVPAWSCSWDLNNSHYIYAGLQNGCVLVFDMCQTAGPMKSLVGLTRNPVHTVHSLSQTSSLSSGVKTILSASAIDLCQWNIDSEERPLMVPETDNQGVCCKLVVVCSYNKPRNKNTYNFSF*






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