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Report for Sequence Feature Glyma19g36761

Feature Type:gene_model
Chromosome:Gm19
Start:44013706
stop:44014486
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g36761
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09870AT Annotation by Michelle Graham. TAIR10: SAUR-like auxin-responsive protein family | chr3:3027555-3027896 REVERSE LENGTH=113 SoyBaseE_val: 7.00E-25ISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF02519PFAM Auxin responsive protein JGI ISS
UniRef100_B9IFQ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: SAUR family protein n=1 Tax=Populus trichocarpa RepID=B9IFQ3_POPTR SoyBaseE_val: 3.00E-30ISS
UniRef100_UPI0002336F90UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002336F90 related cluster n=1 Tax=unknown RepID=UPI0002336F90 SoyBaseE_val: 3.00E-60ISS

Expression Patterns of Glyma19g36761
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g36761 not represented in the dataset
Glyma19g36761 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36761
ParalogEvidenceComments
Glyma03g34011 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36761 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g36761
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g36761
>Glyma19g36761.1   sequence type=CDS   gene model=Glyma19g36761   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCGGTCTTGTCTCAAGCAGTTGCAAAAGAATCTATCGAGTTTTGTTCACTCCAATGAAGATCAAGTACTGGAAGCAGTAACTTTGGTGCCAGAAGATGTTATGGAGGGTCATTTTGCTGTTCTTGCCATCAAGGGTGAAGATACAAGAAGGTTTATTGTTAAGTTAGACTACTTGACTGATCCTATGTTCATGGAACTACTGAACCAAGCTCGAGAGGAGTATGGTTTCAAACAAAAGGGAGCACTTGCAGTCCCTTGCAGGCCTCAGGAATTACAGAACATTCTAGATGGCCCAAGAGCCAAAGCTGAAAGGTCATTTGTGGATGGGGGCGACATGTTTCACCTTCCAAATGTATTAAGGCCCCTCAGCAGAAGCAAGTTTCTTCATGGCATTGTGAGCTTTATAAACATCAGACTTTATATTAAAAAGATCATATATTTATCGAAAAAACAATAA
Predicted protein sequences of Glyma19g36761
>Glyma19g36761.1   sequence type=predicted peptide   gene model=Glyma19g36761   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRSCLKQLQKNLSSFVHSNEDQVLEAVTLVPEDVMEGHFAVLAIKGEDTRRFIVKLDYLTDPMFMELLNQAREEYGFKQKGALAVPCRPQELQNILDGPRAKAERSFVDGGDMFHLPNVLRPLSRSKFLHGIVSFINIRLYIKKIIYLSKKQ*






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