Glyma19g36750 - SoyBase

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Report for Sequence Feature Glyma19g36750

Feature Type:	gene_model
Chromosome:	Gm19
Start:	44005137
stop:	44007735
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g36750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03345	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:814196-815478 FORWARD LENGTH=104	SoyBase	E_val: 8.00E-45	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21181	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR21181:SF6	Panther	gb def: Hypothetical protein	JGI		ISS
PF10270	PFAM	Membrane magnesium transporter	JGI		ISS
UniRef100_I1NAA6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAA6_SOYBN	SoyBase	E_val: 2.00E-74	ISS
UniRef100_Q2QNG6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=3 Tax=Oryza sativa RepID=Q2QNG6_ORYSJ	SoyBase	E_val: 8.00E-44	ISS

Expression Patterns of Glyma19g36750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36750

Paralog	Evidence	Comments
Glyma03g34000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g183500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g36750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g36750

Limit To All Plant Sequences

>Glyma19g36750.2   sequence type=transcript   gene model=Glyma19g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTGATTTTATCTTTATTTTATTTGCTTTGCACTTTGAATTTTCATGTAACATATACACCGGTATTGGGTGAAAAACAGGAATTGGACGGGCCATTGATAACCTTGTGTAGTTCTTGCGGCGGAAGACAAAGAAGTTTAAATAAATGGGTCTAGCTTTAATCGTCGGACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTCACTGCGCCGGGGAAGTTTCTATCCATACATCCTCACTCTGAAGATAACAGAATTGTCTCTTTACCTGCCAACCTAGACTTCATGATCTTCAACCACCGAGGCAAGGCCTTTCCTGTGGAAATGGATTTGAAGCTGAGACAATGAGAACTATTGGATCCAGTGTCTTCATCTCTCACACGAGGAGGAAAATCTTTACACTGGAAAATTAAAGAATTGGGATGTACATTTTGACCGTTGGTTGATGTATCGGTTTTGCTGTTTCTTTTTGTAGCTTTGGCCATTTGCCCTGCTAATAATGTTCACAGGATGTTATTACTTGACTCATGTATGAAGAGATTGCTTGCACTTCAACTAATACTTTACACAATTGATTTCCTGAAGTCACGAGTTAACTTTTTATAGCAGTTATACAACA

Coding sequences of Glyma19g36750

Limit To All Plant Sequences

>Glyma19g36750.1   sequence type=CDS   gene model=Glyma19g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCTAGCTTTAATCGTCGGACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTCACTGCGCCGGGGAAGTTTCTATCCATACATCCTCACTCTGAAGATAACAGTTTGTTCCTTGAATGCAGAATTGTCTCTTTACCTGCCAACCTAGACTTCATGATCTTCAACCACCGAGGCAAGGCCTTTCCTGTGGAAATGGATTTGAAGCTGAGACAATGA

>Glyma19g36750.2   sequence type=CDS   gene model=Glyma19g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCTAGCTTTAATCGTCGGACTCCTCGGCCTTCTGATTCTATTTCACGCCGCTTATTCAACTATTCAGTATAGGGGCCTTTTGAAGATTACGGAGGAAGAGTTTTCAGGGCCTCCATTCGACGTGGTGATTGAGCTGTTTCTTGGATTGTTGCTTTGTTTTTGGGCTGCCCTCACTGCGCCGGGGAAGTTTCTATCCATACATCCTCACTCTGAAGATAACAGAATTGTCTCTTTACCTGCCAACCTAGACTTCATGATCTTCAACCACCGAGGCAAGGCCTTTCCTGTGGAAATGGATTTGAAGCTGAGACAATGA

Predicted protein sequences of Glyma19g36750

Limit To All Plant Sequences

>Glyma19g36750.1   sequence type=predicted peptide   gene model=Glyma19g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLALIVGLLGLLILFHAAYSTIQYRGLLKITEEEFSGPPFDVVIELFLGLLLCFWAALTAPGKFLSIHPHSEDNSLFLECRIVSLPANLDFMIFNHRGKAFPVEMDLKLRQ*

>Glyma19g36750.2   sequence type=predicted peptide   gene model=Glyma19g36750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLALIVGLLGLLILFHAAYSTIQYRGLLKITEEEFSGPPFDVVIELFLGLLLCFWAALTAPGKFLSIHPHSEDNRIVSLPANLDFMIFNHRGKAFPVEMDLKLRQ*

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