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Report for Sequence Feature Glyma19g36710

Feature Type:gene_model
Chromosome:Gm19
Start:43971782
stop:43978119
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g36710
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36990AT Annotation by Michelle Graham. TAIR10: RNApolymerase sigma-subunit F | chr2:15537502-15540016 REVERSE LENGTH=547 SoyBaseE_val: 9.00E-176ISS
GO:0006352GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0016117GO-bp Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0071482GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to light stimulus SoyBaseN/AISS
GO:0071483GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to blue light SoyBaseN/AISS
GO:0090351GO-bp Annotation by Michelle Graham. GO Biological Process: seedling development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0003899GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016987GO-mf Annotation by Michelle Graham. GO Molecular Function: sigma factor activity SoyBaseN/AISS
PF04539PFAM Sigma-70 region 3 JGI ISS
PF04542PFAM Sigma-70 region 2 JGI ISS
PF04545PFAM Sigma-70, region 4 JGI ISS
UniRef100_G7L3V2UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA polymerase sigma factor rpoD n=1 Tax=Medicago truncatula RepID=G7L3V2_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1NAA3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAA3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g36710
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36710
ParalogEvidenceComments
Glyma03g33970 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36710 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g183100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g36710
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g36710
>Glyma19g36710.2   sequence type=transcript   gene model=Glyma19g36710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATTATATAAAAGATTTTTGTAAAATGAAATAATCCAAAGTTGAAAATTAAAAAAGTAAGGAGATTTAAAAAAAAATTGTTTGGTGCACCTCAAATTTTTTAATATCCCTTTTTAGCCTCATTCTTCCAAGCAAAGCCTGCTTCCTCTCTCCCTGAAACCTTCACTGAGTCACCTCCGCACCACCCGACCGCTGCTACCTCCCTCCATCGTGTGTGCAATCCCCCTGCACACTAGATCCGCGCATGGCATCACCCCGTCAATCTGATTCTTATATTGTAATCTTACACCTTCTACACCATATTATTCCTCGTCGAGGACCATGTGGTAGTAAACATTAACTTACCCATAAAATCGAGCAAACCAGCGGCGTCGACAAATAATCCTTCACTGTTACAATAACATCCATCACTGTTCCGTTGCTGCACTCAGAGAGGGTCCAGGGATTTGCATTATGGCGCATTAAGGTGCATCGCCGCGTGAGAAGAGGACAAAATCAGAAACTGGAAATTGGACACGTAGTCCTACACATAGAGAATTGAAGATAGTAACTCAGTGCTGCTAACACCATGTTTTCTTCGTCTCCACCGTTTCCTTCGTCTTCTTCGCCTTCAGTTACGATGCTTCATGAACAAGCTGCTCCTGCAGTTGCCTCATGGTCTTCTAGTTCTGCAGCTCAGCATTTTCCTACTTCGGTTCTTTTACAAGAGCAGCGTGATGAGTATAAGCCCTTTCTGCACGTGCATAATAAGGAGACAACACTAAATACAAGGCAGATGGATATGACCTCAGTTCATGAAAAAGGTAACACAAGCAACGCTGATCAGTTAGTGCATGACTTTGTCCAGCAGTTGCATCTCCGGTCTCATTTACAGAACTTATTGACTTGTTCTCCGACAAGGGGAATTGCTGCTTCTTCAATTCTGCAGCCTGTTGATATTGATTCTGAGTGGCCTGCGGATGGTGTGCCACGGAATGCCGTTTCTCTTGCACAGCAAGCTTTGTCTGCCTCAAAGCAAGCAGTTTCAACAACTGGAGAGATGAAATTGATTGAAATTGATGATGATGATCCACTTCCTTCTGGTCTGGCCTCCACAAGTTTGACTGACTCTTCACTAAAAAAGAATAAAGTTGTGAGGTCAACACGGATTATAGAAAGACTATCTAAACAGAGAAAATCATCAAAGTCAAAATTTCTTGACGAAGAAAGTTACCTTGAAAGAAAGTCTGATGTACAGAGAAGGTTACGTTTAGAAAAGAAGTTAAAAGAAGGGTATGATCCAAATGACCCTTTGCGTTTGTTCCTGTCGGGTCCTGAATCAAGGCAACTTTTGACCCGTGAAGAAGAGTCTCAATTGATTACTCAGTTACAGGATTTATCAAGATTGGAAGAAGTAAAGATCAGGCTTCAAACTCAGTTAAGGCGGGAACCAACTTTGGCTGAATGGGCTGATGCAGTGGGCCATAGTTGTTATGCCCTGCAGACACAGCTTCATTGTGCTAACAGAAGCAAAGAAAAGTTGTTTCATGCTAATTTACGCATGGTAGTTCACATTGCTAAACATTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTTCAGGAGGGAAGTACGGGCCTTATGAAGAGCATTGAAAAGTTTAAACCTGAAGCTGGTTGCCGGTTTGGTACTTATGCATACTGGTGGATAAGGCATGCAGTAAGGAAGGCCATATTTCTACATTCCAGGACAATCCGTTTGCCGGAGAATTTATATACCCTTTTGGGCAAGGTCATAGAAGCAAAGAAATCATACATTCAGGAAGGAAATCTTCACCCTACCAAAGAAGAATTGGCAAGAAAGGTAGGAATTACCATAGAAAAGATGGACAATTTGCTGTTTGCTTCAAGAAATCCAATTTCGATGCAGCAAACTGTGTGGGCGGACCAAGATACAACTTTCCAGGAGATTACTGCAGACTCAGCAATTGAGATCCCAGATGTGACTGTCTCAAAACAGCTAATGAGGATGCATGTGCACAACCTTCTAAATATCTTAAGCCCAAAAGAAAGGGGCATAATCAGGCTAAGATTTGGTATTGAGGATGGCGAGGAGAAAACGTTGTCAGACATTGGCAAGGTGTTTGGTTTGACCAAGGAGAGGGTCCGACAGTTGGAGAGCCGAGCATTGTTGAAGCTCAGGCAGTGTCTTGAAAGTCAAGGACTTGATGCATACACAGACTTGCTTGTATAGATGAGTAGACACCAGGAAGTTCGTCTTACTTGGCTGTGACTTTTTTTCTGGCCATGTGCAAAAGCAATAACTAGATCAAGCTTTTGATGAGAAAGCTGACACTCAGCCATGGTAATTGAGGATGAACCGGGGTAGCTATTTGGGGATAAAGAGAATTCAAGAACCAAAAAAGCTTGGGTAGTTTGTAAAAATTGAGAAGCCAAATTTACGCGAATCAAAAACCATATTTTGATTTAAACTGCTGTAATATATTGATGCCATGCCATTGGGATAGGATGTGTTTACACCATGTCTAAAGATTTACACTAAATCTACACGTTGGTATAGGTTAATTGCATGATTTATAATATCTTAATAAATATGGTAACTTAATATATTTA
Coding sequences of Glyma19g36710
>Glyma19g36710.1   sequence type=CDS   gene model=Glyma19g36710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCTTCGTCTCCACCGTTTCCTTCGTCTTCTTCGCCTTCAGTTACGATGCTTCATGAACAAGCTGCTCCTGCAGTTGCCTCATGGTCTTCTAGTTCTGCAGCTCAGCATTTTCCTACTTCGGTTCTTTTACAAGAGCAGCGTGATGAGTATAAGCCCTTTCTGCACGTGCATAATAAGGAGACAACACTAAATACAAGGCAGATGGATATGACCTCAGTTCATGAAAAAGGTAACACAAGCAACGCTGATCAGTTAGTGCATGACTTTGTCCAGCAGTTGCATCTCCGGTCTCATTTACAGAACTTATTGACTTGTTCTCCGACAAGGGGAATTGCTGCTTCTTCAATTCTGCAGCCTGTTGATATTGATTCTGAGTGGCCTGCGGATGGTGTGCCACGGAATGCCGTTTCTCTTGCACAGCAAGCTTTGTCTGCCTCAAAGCAAGCAGTTTCAACAACTGGAGAGATGAAATTGATTGAAATTGATGATGATGATCCACTTCCTTCTGGTCTGGCCTCCACAAGTTTGACTGACTCTTCACTAAAAAAGAATAAAGTTGTGAGGTCAACACGGATTATAGAAAGACTATCTAAACAGAGAAAATCATCAAAGTCAAAATTTCTTGACGAAGAAAGTTACCTTGAAAGAAAGTCTGATGTACAGAGAAGGTTACGTTTAGAAAAGAAGTTAAAAGAAGGGTATGATCCAAATGACCCTTTGCGTTTGTTCCTGTCGGGTCCTGAATCAAGGCAACTTTTGACCCGTGAAGAAGAGTCTCAATTGATTACTCAGTTACAGGATTTATCAAGATTGGAAGAAGTAAAGATCAGGCTTCAAACTCAGTTAAGGCGGGAACCAACTTTGGCTGAATGGGCTGATGCAGTGGGCCATAGTTGTTATGCCCTGCAGACACAGCTTCATTGTGCTAACAGAAGCAAAGAAAAGTTGTTTCATGCTAATTTACGCATGGTAGTTCACATTGCTAAACATTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTTCAGGAGGGAAGTACGGGCCTTATGAAGAGCATTGAAAAGTTTAAACCTGAAGCTGGTTGCCGGTTTGGTACTTATGCATACTGGTGGATAAGGCATGCAGTAAGGAAGGCCATATTTCTACATTCCAGGACAATCCGTTTGCCGGAGAATTTATATACCCTTTTGGGCAAGGTCATAGAAGCAAAGAAATCATACATTCAGGAAGGAAATCTTCACCCTACCAAAGAAGAATTGGCAAGAAAGGTAGGAATTACCATAGAAAAGATGGACAATTTGCTGTTTGCTTCAAGAAATCCAATTTCGATGCAGCAAACTGTGTGGGCGGACCAAGATACAACTTTCCAGGAGATTACTGCAGACTCAGCAATTGAGATCCCAGATGTGACTGTCTCAAAACAGCTAATGAGGATGCATGTGCACAACCTTCTAAATATCTTAAGCCCAAAAGAAAGGGGCATAATCAGGCTAAGATTTGGTATTGAGGATGGCGAGGAGAAAACGTTGTCAGACATTGGCAAGGTGTTTGGTTTGACCAAGGAGAGGGTCCGACAGTTGGAGAGCCGAGCATTGTTGAAGCTCAGGCAGTGTCTTGAAAGTCAAGGACTTGATGCATACACAGACTTGCTTGTATAG

>Glyma19g36710.2   sequence type=CDS   gene model=Glyma19g36710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTCTTCGTCTCCACCGTTTCCTTCGTCTTCTTCGCCTTCAGTTACGATGCTTCATGAACAAGCTGCTCCTGCAGTTGCCTCATGGTCTTCTAGTTCTGCAGCTCAGCATTTTCCTACTTCGGTTCTTTTACAAGAGCAGCGTGATGAGTATAAGCCCTTTCTGCACGTGCATAATAAGGAGACAACACTAAATACAAGGCAGATGGATATGACCTCAGTTCATGAAAAAGGTAACACAAGCAACGCTGATCAGTTAGTGCATGACTTTGTCCAGCAGTTGCATCTCCGGTCTCATTTACAGAACTTATTGACTTGTTCTCCGACAAGGGGAATTGCTGCTTCTTCAATTCTGCAGCCTGTTGATATTGATTCTGAGTGGCCTGCGGATGGTGTGCCACGGAATGCCGTTTCTCTTGCACAGCAAGCTTTGTCTGCCTCAAAGCAAGCAGTTTCAACAACTGGAGAGATGAAATTGATTGAAATTGATGATGATGATCCACTTCCTTCTGGTCTGGCCTCCACAAGTTTGACTGACTCTTCACTAAAAAAGAATAAAGTTGTGAGGTCAACACGGATTATAGAAAGACTATCTAAACAGAGAAAATCATCAAAGTCAAAATTTCTTGACGAAGAAAGTTACCTTGAAAGAAAGTCTGATGTACAGAGAAGGTTACGTTTAGAAAAGAAGTTAAAAGAAGGGTATGATCCAAATGACCCTTTGCGTTTGTTCCTGTCGGGTCCTGAATCAAGGCAACTTTTGACCCGTGAAGAAGAGTCTCAATTGATTACTCAGTTACAGGATTTATCAAGATTGGAAGAAGTAAAGATCAGGCTTCAAACTCAGTTAAGGCGGGAACCAACTTTGGCTGAATGGGCTGATGCAGTGGGCCATAGTTGTTATGCCCTGCAGACACAGCTTCATTGTGCTAACAGAAGCAAAGAAAAGTTGTTTCATGCTAATTTACGCATGGTAGTTCACATTGCTAAACATTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTTCAGGAGGGAAGTACGGGCCTTATGAAGAGCATTGAAAAGTTTAAACCTGAAGCTGGTTGCCGGTTTGGTACTTATGCATACTGGTGGATAAGGCATGCAGTAAGGAAGGCCATATTTCTACATTCCAGGACAATCCGTTTGCCGGAGAATTTATATACCCTTTTGGGCAAGGTCATAGAAGCAAAGAAATCATACATTCAGGAAGGAAATCTTCACCCTACCAAAGAAGAATTGGCAAGAAAGGTAGGAATTACCATAGAAAAGATGGACAATTTGCTGTTTGCTTCAAGAAATCCAATTTCGATGCAGCAAACTGTGTGGGCGGACCAAGATACAACTTTCCAGGAGATTACTGCAGACTCAGCAATTGAGATCCCAGATGTGACTGTCTCAAAACAGCTAATGAGGATGCATGTGCACAACCTTCTAAATATCTTAAGCCCAAAAGAAAGGGGCATAATCAGGCTAAGATTTGGTATTGAGGATGGCGAGGAGAAAACGTTGTCAGACATTGGCAAGGTGTTTGGTTTGACCAAGGAGAGGGTCCGACAGTTGGAGAGCCGAGCATTGTTGAAGCTCAGGCAGTGTCTTGAAAGTCAAGGACTTGATGCATACACAGACTTGCTTGTATAG
Predicted protein sequences of Glyma19g36710
>Glyma19g36710.1   sequence type=predicted peptide   gene model=Glyma19g36710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSSSPPFPSSSSPSVTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPFLHVHNKETTLNTRQMDMTSVHEKGNTSNADQLVHDFVQQLHLRSHLQNLLTCSPTRGIAASSILQPVDIDSEWPADGVPRNAVSLAQQALSASKQAVSTTGEMKLIEIDDDDPLPSGLASTSLTDSSLKKNKVVRSTRIIERLSKQRKSSKSKFLDEESYLERKSDVQRRLRLEKKLKEGYDPNDPLRLFLSGPESRQLLTREEESQLITQLQDLSRLEEVKIRLQTQLRREPTLAEWADAVGHSCYALQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIEKFKPEAGCRFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAKKSYIQEGNLHPTKEELARKVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADSAIEIPDVTVSKQLMRMHVHNLLNILSPKERGIIRLRFGIEDGEEKTLSDIGKVFGLTKERVRQLESRALLKLRQCLESQGLDAYTDLLV*

>Glyma19g36710.2   sequence type=predicted peptide   gene model=Glyma19g36710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSSSPPFPSSSSPSVTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPFLHVHNKETTLNTRQMDMTSVHEKGNTSNADQLVHDFVQQLHLRSHLQNLLTCSPTRGIAASSILQPVDIDSEWPADGVPRNAVSLAQQALSASKQAVSTTGEMKLIEIDDDDPLPSGLASTSLTDSSLKKNKVVRSTRIIERLSKQRKSSKSKFLDEESYLERKSDVQRRLRLEKKLKEGYDPNDPLRLFLSGPESRQLLTREEESQLITQLQDLSRLEEVKIRLQTQLRREPTLAEWADAVGHSCYALQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIEKFKPEAGCRFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAKKSYIQEGNLHPTKEELARKVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADSAIEIPDVTVSKQLMRMHVHNLLNILSPKERGIIRLRFGIEDGEEKTLSDIGKVFGLTKERVRQLESRALLKLRQCLESQGLDAYTDLLV*






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