Glyma19g36680 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g36680

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43952521
stop:	43956404
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g36680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37020	AT	Annotation by Michelle Graham. TAIR10: Translin family protein \| chr2:15546514-15548792 FORWARD LENGTH=308	SoyBase	E_val: 2.00E-125	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG3067	KOG	Translin family protein	JGI		ISS
PTHR10741	Panther	TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X	JGI		ISS
PTHR10741:SF2	Panther	TRANSLIN-RELATED	JGI		ISS
PF01997	PFAM	Translin family	JGI		ISS
UniRef100_G7L3U6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Translin-like protein n=1 Tax=Medicago truncatula RepID=G7L3U6_MEDTR	SoyBase	E_val: 2.00E-139	ISS
UniRef100_I1NAA0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAA0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g36680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36680

Paralog	Evidence	Comments
Glyma03g33941	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g182800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g36680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g36680

Limit To All Plant Sequences

>Glyma19g36680.1   sequence type=CDS   gene model=Glyma19g36680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATACACGAAACCAGCGTTTCGAAACGCGGCTTTCTACTGCCACGTCTTCTCTCGCTCCTTAACCTTAAACCCTAACCCTCTGCTCCTCGTTTCCCCGTTTCGGAAACCCGAAACGTTTCGCCTCGCTTCACCCGTTTCGTGCTTATCCTCCTCCTCAATGGCGGTGCCTCCGTCTTCGCTGGAGAAGCAATTCGATGACTTTAGGGTTCAGCTGGAAGAATCTGGAACCTTGCGCGAACGAATTCGAAGCGTCGTTTCGGAGATTGAGTCCTCCACTAGGCTCATCTATGCCACACTTCTTCTCGTTCACCAGTCTCGTCCCACTCCCGAGCTTTTAGAGAAGGCCAAGTCTCATGTTAATGTGTTAAAGAAGCAGTATAAGCAACTTGCTGAAGTTGTTGGAGGATGCCCTGGGCAATACTATAGGTACCATGGTGATTGGAAGAGTGAGACACAGTCTGTAGTTTCAATGCTTACATTTATGCACTGGCTTGAAACAGGAAGCCTTCTCGAGCACAAAGAGGCTGAGGAAAAACTTGGGTTGAATAGTTCAGAATTTGGCCTAGACGTTGAAGATTACTTAATAGGTGTCTGTTTTATGTCTAATGAATTGCCAAGGTATGTGGTGAATCAAGTGACAGCTGGGGACTATGATTGTCCAAGGAAGGTCTTAAAGTTCTTAACAGATCTCCATGCTGCATTCCGCATGCTTAATCTACGAAATGATTTTTTGCGAAAGAAGTTTGATGGCATGAAGTATGACTTAAGAAAAGTCGAAGAAGTTTACTATGATGTTAAGATTCGGGGTTTGACACCGAATGGTGAGCCAGTTGGAGACTTGGAGATCAAGGAATCGCAGGACAATCTTAATCTTAAGTTGTGA

Predicted protein sequences of Glyma19g36680

Limit To All Plant Sequences

>Glyma19g36680.1   sequence type=predicted peptide   gene model=Glyma19g36680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQYTKPAFRNAAFYCHVFSRSLTLNPNPLLLVSPFRKPETFRLASPVSCLSSSSMAVPPSSLEKQFDDFRVQLEESGTLRERIRSVVSEIESSTRLIYATLLLVHQSRPTPELLEKAKSHVNVLKKQYKQLAEVVGGCPGQYYRYHGDWKSETQSVVSMLTFMHWLETGSLLEHKEAEEKLGLNSSEFGLDVEDYLIGVCFMSNELPRYVVNQVTAGDYDCPRKVLKFLTDLHAAFRMLNLRNDFLRKKFDGMKYDLRKVEEVYYDVKIRGLTPNGEPVGDLEIKESQDNLNLKL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain