Glyma19g36650 - SoyBase

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Report for Sequence Feature Glyma19g36650

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43937057
stop:	43939796
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g36650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37035	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). \| chr2:15555374-15556780 REVERSE LENGTH=433	SoyBase	E_val: 5.00E-144	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1NA98	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NA98_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XDC6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XDC6_ORYSJ	SoyBase	E_val: 8.00E-56	ISS

Expression Patterns of Glyma19g36650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36650

Paralog	Evidence	Comments
Glyma03g33920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g182500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g36650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g36650

Limit To All Plant Sequences

>Glyma19g36650.1   sequence type=CDS   gene model=Glyma19g36650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGACCACCACCCTCGGTTGCAGCACCTTCGTTCAGCCTCTCACCTATTGAAAGAATCATTTTCTTCTTTCTCCTCAAATTTCCTCATATTTTTGTTCCTTTCTCTCTTAACTCTTTCTTTTCGCACCCTCGTCGAAACCGGCACCGCCCATGTCACCTCCTTTATCGACCGCGACCCTTCCCTCCGCGCCCTCCTCTCCCGCCTCGACCTCGCCGGAAACTCCCACAACCACCATAACGGCCACGACCTTCCTTCTCCGAACAACCACCGCCACCGCCGCCGCCCCTTCCTCCACCTCACCCGCGTCGGAACCCTAGACGACGACTTCTTCTCCGGCGACGACGATGACGCCCGCTCCCTCTTCGGCTCCATCCCCAAACCCTCAGCCAACGCCACCCTCCTCGCCCTCTCCCCCTTCAAAACCACCTCCGCCTTCTCAGATCTCTTCGCCGACGACGGAATTAGGGTTTCCCAAGTGATCCGCTCCGGCACCACCTTCAACACCCAAGGATTGTCCTCCTTATCTTCGTCGTCGTCGCGGCGCGACAACGACGACGACGACGACGATAGGGAGGAGAAGGAAGAACCGACGAAGGAGAAGGTGGATTTGCAATTCTTCGTGAAGGGGATCGAGGTGGGCCGCCGAGACGCGGCGGCGCTGTTCTTCCTGGTGAGCTTCCTCTCCGCCGTGTACGGATGGGTGATCCTTGTTTTCCTCGTGACGTACTCGTGGGTGTTGGGTGTCGTTTTCGTTTCCGTTGTGAACGATCTGTTGGGTAGGTTTAGCTCCGTCACCGTTTTGGTTTGGGAAGGTTCGAGGTTAGGTCTGAAGAGGCTTTCGGGGTTTATTCTGATGCGTTGGGCCGTGAGGGACGCGTTGACTCAGCTTCTTGGGTTGTGGTACTTCGGAGAAGTTGAGGATCAGTACTCGTTTTTCAAGCTCTTTGTTAGGTTAAAGTTGATGCCTTTCTCGGTTATGTCCCCTTGGGTTAGGGGCTTTGAGAGGGAGATTTCTGGGTTCCTTTTTACTTGGTTTCTGGTGGATACTTTTGTGGCTTTTATATTCTCTGTGGATGCTTGGGTTGCCATTGTAGACTCAAGGAAGAGTGGGAGGGAGATTGTGAAGGAAGGGTGTTATTTGATATCCACTATGTTGAATCAGGCTATTCAGGTGAAGTGCTTGGAGGCTATACTTTGCGGGTCGTTTGTGAGGTGGGGTTTGAGCCGGGTTTGCGGGAGGTCCTTGGCCAAGATGTTTCAGTCCACCATGGAGGTTTACTTCATGGTGACTTGGCTTATGTTTTACTTTGCAGCGCGGTGTAAGGACGCCGATCTTCATGGTAGGAGGTTCGGGCAGAGGGAGCTGGAGGGCTTGGTTGAAGGTCACAGATGA

Predicted protein sequences of Glyma19g36650

Limit To All Plant Sequences

>Glyma19g36650.1   sequence type=predicted peptide   gene model=Glyma19g36650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDHHPRLQHLRSASHLLKESFSSFSSNFLIFLFLSLLTLSFRTLVETGTAHVTSFIDRDPSLRALLSRLDLAGNSHNHHNGHDLPSPNNHRHRRRPFLHLTRVGTLDDDFFSGDDDDARSLFGSIPKPSANATLLALSPFKTTSAFSDLFADDGIRVSQVIRSGTTFNTQGLSSLSSSSSRRDNDDDDDDREEKEEPTKEKVDLQFFVKGIEVGRRDAAALFFLVSFLSAVYGWVILVFLVTYSWVLGVVFVSVVNDLLGRFSSVTVLVWEGSRLGLKRLSGFILMRWAVRDALTQLLGLWYFGEVEDQYSFFKLFVRLKLMPFSVMSPWVRGFEREISGFLFTWFLVDTFVAFIFSVDAWVAIVDSRKSGREIVKEGCYLISTMLNQAIQVKCLEAILCGSFVRWGLSRVCGRSLAKMFQSTMEVYFMVTWLMFYFAARCKDADLHGRRFGQRELEGLVEGHR*

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