Glyma19g36630 - SoyBase

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Report for Sequence Feature Glyma19g36630

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43929130
stop:	43934224
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g36630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09820	AT	Annotation by Michelle Graham. TAIR10: adenosine kinase 1 \| chr3:3012122-3014624 FORWARD LENGTH=344	SoyBase	E_val: 0	ISS
GO:0006166	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine ribonucleoside salvage	SoyBase	N/A	ISS
GO:0006169	GO-bp	Annotation by Michelle Graham. GO Biological Process: adenosine salvage	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0080094	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to trehalose-6-phosphate stimulus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004001	GO-mf	Annotation by Michelle Graham. GO Molecular Function: adenosine kinase activity	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0016773	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor	SoyBase	N/A	ISS
KOG2854	KOG	Possible pfkB family carbohydrate kinase	JGI		ISS
PTHR10584	Panther	SUGAR KINASE RELATED	JGI		ISS
PTHR10584:SF24	Panther	RIBOKINASE	JGI		ISS
PF00294	PFAM	pfkB family carbohydrate kinase	JGI		ISS
UniRef100_C6TBG9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TBG9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2XPV0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Adenosine kinase isoform 1T-like protein n=1 Tax=Solanum tuberosum RepID=Q2XPV0_SOLTU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g36630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36630

Paralog	Evidence	Comments
Glyma03g33910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g182400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g36630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g36630

Limit To All Plant Sequences

>Glyma19g36630.2   sequence type=transcript   gene model=Glyma19g36630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTCCGAAGGCACTCTCCTGGGCATGGGTAACCCTCTCCTCGACATCTCCGCCGTCGTCGATGAAGACTTCTTAAAAAAATATGATATCACCTCGAACAATGCGATTCTTGCGGAGGACAAGCACAAGCCTATGTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAGGTGCCACTCAGAATTCAATCAAGGTTGCTCAATGGATGCTCCAAGTTCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAAGCTTGCTGGTGTAAATGTTCACTATTATGAAGATGAAACTACACCTACTGGAACTTGTGCTGTTTGTATAGTTGGTGGTGAAAGGTCTCTTGTGGCGAACTTAGCAGCTGCCAATTGCTACAAGTCTGATCATTTGAAGAGACCAGAAAATTGGGCACTAGTTGAAAAGGCCAAGTATATTTATATTGCCGGCTTTTTCCTCACTGTATCACCAGATTCCATCCAGTTAGTTGCTGAGCATTCTGCTGCAAATAACAAGATCTTCTCAATGAACCTTTCTGCTCCTTTTATCTGTGAGTTTTTCAGGGATGTACAGGAGAAAGCTCTACCGTATACGGACTTTGTTTTCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCATCAGGAACACACAAAAGGATAACAGTTATCACACAGGGTGCGGATCCTATTTGTGTTGCTGAGGATGGGAAGGTGAAAAAGTTCCTACTGCTGTTGCTATTCATGCTGTTGCTGTGCGTCGTGCAGGGGTCTCCTTTTGCAGGTGGCATTCGGGTAGGGTTGGCTTGGGTCGGGTCAGCCCAACAGGTGTTGCGCAAAATTTTAAAAAAAAAGTGCTATTCTGCCATTCCGCAACGACCGCCATGGCTATGGCAGCTGCCATACGAAACCCGCAACGTCACCGCTATTTGGTGGCGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCATTGAAGAATGTGTGAGAGCTGGCTGTTATGCAGCAAATGTTATCATCCAAAGGTCTGGCTGTACGTACCCAGAGAAGCCTGATTTTCATTGA

Coding sequences of Glyma19g36630

Limit To All Plant Sequences

>Glyma19g36630.1   sequence type=CDS   gene model=Glyma19g36630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTCCGAAGGCACTCTCCTGGGCATGGGTAACCCTCTCCTCGACATCTCCGCCGTCGTCGATGAAGACTTCTTAAAAAAATATGATATCACCTCGAACAATGCGATTCTTGCGGAGGACAAGCACAAGCCTATGTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAGGTGCCACTCAGAATTCAATCAAGGTTGCTCAATGGATGCTCCAAGTTCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAAGCTTGCTGGTGTAAATGTTCACTATTATGAAGATGAAACTACACCTACTGGAACTTGTGCTGTTTGTATAGTTGGTGGTGAAAGGTCTCTTGTGGCGAACTTAGCAGCTGCCAATTGCTACAAGTCTGATCATTTGAAGAGACCAGAAAATTGGGCACTAGTTGAAAAGGCCAAGTATATTTATATTGCCGGCTTTTTCCTCACTGTATCACCAGATTCCATCCAGTTAGTTGCTGAGCATTCTGCTGCAAATAACAAGATCTTCTCAATGAACCTTTCTGCTCCTTTTATCTGTGAGTTTTTCAGGGATGTACAGGAGAAAGCTCTACCGTATACGGACTTTGTTTTCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCATCAGGAACACACAAAAGGATAACAGTTATCACACAGGGTGCGGATCCTATTTGTGTTGCTGAGGATGGGAAGGTGAAAAAGTTCCTGTGA

>Glyma19g36630.2   sequence type=CDS   gene model=Glyma19g36630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTCCGAAGGCACTCTCCTGGGCATGGGTAACCCTCTCCTCGACATCTCCGCCGTCGTCGATGAAGACTTCTTAAAAAAATATGATATCACCTCGAACAATGCGATTCTTGCGGAGGACAAGCACAAGCCTATGTATCAAGAATTGGCTGAGAAATATAATGTGGAGTACATTGCTGGAGGTGCCACTCAGAATTCAATCAAGGTTGCTCAATGGATGCTCCAAGTTCCTGGTGCAACAAGTTACATGGGTGGCATAGGAAAGGATAAGTTTGGGGAAGAGATGAAGAAGAACTCAAAGCTTGCTGGTGTAAATGTTCACTATTATGAAGATGAAACTACACCTACTGGAACTTGTGCTGTTTGTATAGTTGGTGGTGAAAGGTCTCTTGTGGCGAACTTAGCAGCTGCCAATTGCTACAAGTCTGATCATTTGAAGAGACCAGAAAATTGGGCACTAGTTGAAAAGGCCAAGTATATTTATATTGCCGGCTTTTTCCTCACTGTATCACCAGATTCCATCCAGTTAGTTGCTGAGCATTCTGCTGCAAATAACAAGATCTTCTCAATGAACCTTTCTGCTCCTTTTATCTGTGAGTTTTTCAGGGATGTACAGGAGAAAGCTCTACCGTATACGGACTTTGTTTTCGGAAATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGACTGATAATGTCGAGGAGATAGCTGTAAAGATTTCCCAATGGCCAAAGGCATCAGGAACACACAAAAGGATAACAGTTATCACACAGGGTGCGGATCCTATTTGTGTTGCTGAGGATGGGAAGGTGAAAAAGTTCCTACTGCTGTTGCTATTCATGCTGTTGCTGTGCGTCGTGCAGGGGTCTCCTTTTGCAGGTGGCATTCGGGTAGGGTTGGCTTGGGTCGGGTCAGCCCAACAGGTGTTGCGCAAAATTTTAAAAAAAAAGTGCTATTCTGCCATTCCGCAACGACCGCCATGGCTATGGCAGCTGCCATACGAAACCCGCAACGTCACCGCTATTTGGTGGCGAGATGCATTTGTTGGAGGATTTCTTTCTCAATTGGTTCAGGAGAAGCCCATTGAAGAATGTGTGAGAGCTGGCTGTTATGCAGCAAATGTTATCATCCAAAGGTCTGGCTGTACGTACCCAGAGAAGCCTGATTTTCATTGA

Predicted protein sequences of Glyma19g36630

Limit To All Plant Sequences

>Glyma19g36630.1   sequence type=predicted peptide   gene model=Glyma19g36630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSEGTLLGMGNPLLDISAVVDEDFLKKYDITSNNAILAEDKHKPMYQELAEKYNVEYIAGGATQNSIKVAQWMLQVPGATSYMGGIGKDKFGEEMKKNSKLAGVNVHYYEDETTPTGTCAVCIVGGERSLVANLAAANCYKSDHLKRPENWALVEKAKYIYIAGFFLTVSPDSIQLVAEHSAANNKIFSMNLSAPFICEFFRDVQEKALPYTDFVFGNETEARTFSKVHGWETDNVEEIAVKISQWPKASGTHKRITVITQGADPICVAEDGKVKKFL*

>Glyma19g36630.2   sequence type=predicted peptide   gene model=Glyma19g36630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSEGTLLGMGNPLLDISAVVDEDFLKKYDITSNNAILAEDKHKPMYQELAEKYNVEYIAGGATQNSIKVAQWMLQVPGATSYMGGIGKDKFGEEMKKNSKLAGVNVHYYEDETTPTGTCAVCIVGGERSLVANLAAANCYKSDHLKRPENWALVEKAKYIYIAGFFLTVSPDSIQLVAEHSAANNKIFSMNLSAPFICEFFRDVQEKALPYTDFVFGNETEARTFSKVHGWETDNVEEIAVKISQWPKASGTHKRITVITQGADPICVAEDGKVKKFLLLLLFMLLLCVVQGSPFAGGIRVGLAWVGSAQQVLRKILKKKCYSAIPQRPPWLWQLPYETRNVTAIWWRDAFVGGFLSQLVQEKPIEECVRAGCYAANVIIQRSGCTYPEKPDFH*

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