Glyma19g36625 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g36625

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43920562
stop:	43922194
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g36625

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_G7L3U2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chromodomain-helicase-DNA-binding protein n=1 Tax=Medicago truncatula RepID=G7L3U2_MEDTR	SoyBase	E_val: 8.00E-35	ISS
UniRef100_I1JPN1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPN1_SOYBN	SoyBase	E_val: 1.00E-95	ISS

Expression Patterns of Glyma19g36625

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g36625 not represented in the dataset	Glyma19g36625 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36625

Paralog	Evidence	Comments
Glyma03g33900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36625 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma19g36625

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g36625

Limit To All Plant Sequences

>Glyma19g36625.1   sequence type=CDS   gene model=Glyma19g36625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCAACCCTGTTACTGGTTCTTTGGAAAGACAGAGTCCTATTAGAAGTACAGATATTAGACAATCTGATGGCAATTGAAGATCCTCAAATTTTAGTGAATGAAGTGGTTGCTATTGACAATGCTACGAATATGTCTATCCATTCTGCGCAGCTTAACAGTGTTGAGGCAGATGCCGGAACTTCTGCTAGTACTGCTGTTCCTGAGTTCAGACAGTGGTACAGTGTAACGAGTCCTGTATGTGATGAGTCAACTGCTCTGGAGTCTCCTGAGACTACCTTGCCATATATGCAACCATCGGATTCAAATTGGTGGCCATTGCCTCAGATGGCAATGTCTGCTATTCCATCTTTTCCGGAGAACAATTCAGGCAGTACAGTCATGCCTCTAGATGATATTTTTTGTCATAGTAGTGAGGATCATTGCTACATTCATGAGGCTGAAGTAATATTGGAAGCACCAAACGACCTTAACTCTTCCTTTGTTTCACCTGTGATATTGCAACCATTCACTAGTGTGCTCATGAATGAAAATACAGCACATGTACCTGACAGCATTACTACTCCTGGATTTATGAACAGTGATTATTTTCAAGCTCACTCTGTGACATCTGAGATGGCGATAATAGAAAACATGAATGAAGAAGCCTTCAGAGATCCACACCAATAG

Predicted protein sequences of Glyma19g36625

Limit To All Plant Sequences

>Glyma19g36625.1   sequence type=predicted peptide   gene model=Glyma19g36625   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSTLLLVLWKDRVLLEVQILDNLMAIEDPQILVNEVVAIDNATNMSIHSAQLNSVEADAGTSASTAVPEFRQWYSVTSPVCDESTALESPETTLPYMQPSDSNWWPLPQMAMSAIPSFPENNSGSTVMPLDDIFCHSSEDHCYIHEAEVILEAPNDLNSSFVSPVILQPFTSVLMNENTAHVPDSITTPGFMNSDYFQAHSVTSEMAIIENMNEEAFRDPHQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain