Glyma19g36500 - SoyBase

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Report for Sequence Feature Glyma19g36500

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43778793
stop:	43780879
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g36500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53400	AT	Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 47 (TAIR:AT5G03190.1); Has 285 Blast hits to 285 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). \| chr3:19798526-19799926 FORWARD LENGTH=466	SoyBase	E_val: 2.00E-126	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1NA87	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NA87_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LYW6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 n=1 Tax=Arabidopsis thaliana RepID=Q9LYW6_ARATH	SoyBase	E_val: 2.00E-110	ISS

Expression Patterns of Glyma19g36500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36500

Paralog	Evidence	Comments
Glyma03g33763	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g181000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g36500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g36500

Limit To All Plant Sequences

>Glyma19g36500.1   sequence type=CDS   gene model=Glyma19g36500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACCAAGGCATTCAAATTCCAGATCCTTACTAGCTCCATCGCCAGGCGCGTGCTCCTTCGCACAATCCTACTCGCGTGCGCTGTCTCGTTTGTCTCTCTGTACCGCGCCCTATCCCTCTTCGATTTCGGAACCCTCGCTCCCATCGCCACCTACTTCGACTGCGTCTCCGGCTTCCAGAGCGTCACCTTCCGCCCCGGTTCCCCCTTACTCCGAACCCGGTTCGGGGTCTCCGCCAATTGCGAGAAAGACGCCAATTTGACCCTCACTGTGGTCACCGAGCTAACCGGTAGCCGGTTACTCCACCCCGGAGCTAAAAGCCTCTGCGTCGGAGAAGGCTCCTCAATGGCCGTCACGGCAATGAAACAGTTAGGTTTTTTCTCCAGCGTCAGCGCCGTCCAAACGCACCGTTTCGAGCAGAGGAACGTCCTGTACGAGGATAATTCCTTCGATTTCGTGTTCTCGAGAGACCTAGACAAGGTTTCTGTCCCGGCATTGCTGGTTCTCGAGGTTGAGCGTGTCCTTAAGCCAGGTGGCGTTGGTGTCTTCCTTGTAGGCACCACAAGTTCTCACCCCAATGACATGATAAGAGCAGCCACACCTGTGTCCTCGTTATTAAGGTCTTCCAATGTTGTGCATGTTGGTTCTGTCAACGACCATAACCTTGTTGTTTTCAAGAAACGAGTTGAAAACGCTACTTTGTTTTACCAACATGGTTTACCCGCTGATTGTCCCAGTGTCACCTTCACCAAACCCCTTATAGAGTTAATGGAGCCTCTCGTGAGTGAGAAACAACAACAACCACCGATTGAGTTTCACAAGAGGAATATTCCCTATTTGCCTAAGTTTGTGGATGTTTCCACTAGGAAGAGGTTGGTGTATATTGACATTGGGGTAGGGGAGCTTCTTGATGCCAATGTTAGTGATTGTTGGTTCCTACCATCGTACCCCATTGATCAGAAGGATTTCAATGTTTATTTTGTTCACTACAACACTTCGATTATGTTGTCCTATGTGAAGCGACCTGGTATTACCTTTGTTTACCACCCTGGCTTGGCTGGTATTGATAAGGTCAATGCTAAGCTTGGTAGTGATGATGATGATGACATGGATCCTTTACTTGGGGAGGAGGAGAAGTTTGATTTCCCTGCGTGGTTCAAAGAAACTGTGCAATATGCTGATTTTGTGGTCCTCAAGATGAACGCAGGAAGTGTTGAGCTCAAGTTCCTCTCGGACATATTTGAGAATGGAGCTATATGCTTTGTTGATGAGTTGTTTCTCAAGTGTCCCGAGAGGAGGGGAGGTGATGAGAAAAGTGTAACCAGCAAGGAAAGTTGCATGGATATTTACAAGGCTCTCCGAAGCAATGGTGTCTATGTGCATCAATGGTGGGGAGACTGA

Predicted protein sequences of Glyma19g36500

Limit To All Plant Sequences

>Glyma19g36500.1   sequence type=predicted peptide   gene model=Glyma19g36500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTKAFKFQILTSSIARRVLLRTILLACAVSFVSLYRALSLFDFGTLAPIATYFDCVSGFQSVTFRPGSPLLRTRFGVSANCEKDANLTLTVVTELTGSRLLHPGAKSLCVGEGSSMAVTAMKQLGFFSSVSAVQTHRFEQRNVLYEDNSFDFVFSRDLDKVSVPALLVLEVERVLKPGGVGVFLVGTTSSHPNDMIRAATPVSSLLRSSNVVHVGSVNDHNLVVFKKRVENATLFYQHGLPADCPSVTFTKPLIELMEPLVSEKQQQPPIEFHKRNIPYLPKFVDVSTRKRLVYIDIGVGELLDANVSDCWFLPSYPIDQKDFNVYFVHYNTSIMLSYVKRPGITFVYHPGLAGIDKVNAKLGSDDDDDMDPLLGEEEKFDFPAWFKETVQYADFVVLKMNAGSVELKFLSDIFENGAICFVDELFLKCPERRGGDEKSVTSKESCMDIYKALRSNGVYVHQWWGD*

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