Glyma19g36480 - SoyBase

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Report for Sequence Feature Glyma19g36480

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43754822
stop:	43761175
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g36480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53390	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr3:19792781-19796428 FORWARD LENGTH=558	SoyBase	E_val: 0	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009755	GO-bp	Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0048825	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon development	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG2394	KOG	WD40 protein DMR-N9	JGI		ISS
PTHR14107	Panther	WD REPEAT PROTEIN	JGI		ISS
PTHR14107:SF1	Panther	WD-REPEAT DMR-N9 - RELATED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7L2S1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7L2S1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JPL4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPL4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g36480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36480

Paralog	Evidence	Comments
Glyma03g33740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g180800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g36480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g36480

Limit To All Plant Sequences

>Glyma19g36480.1   sequence type=CDS   gene model=Glyma19g36480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAACACAGCTAACGGCACGATGATGTCACCGTCGTCTTCGTCGGTAACGGCGCAGTCGCCGGGACTGAAGACCTATTTCAAAACCCCCGAGGGGAGATATAAGCTTCATTACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGGTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACTGCGTCCTCGTCGTCATCAAGTTTCAGTGCCAGCAGTGGGGTACGGTCAGCGGCAGCTAGATTGCTGGGAGGAAGCAACGGAAGCCGGGCACTTAGTTTTGTTGGAGGCAACGGTGGCAGCAAGAGTAATGGAGGAAATACTAGGATTGGTTCGATTGGTGCTTCAAGTACAAGTAGTGCAATGGCGAATCCGAATTTTGACGGGAAAGGAACTTACTTGATCTTCAATGTCGGAGATGCAATTTTCATTAGTGATTTGAATTCACAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCTGTGTGCCACGCATTTGATCAGGATGCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACTCTGGTGATGTCTACTCAGTGTCATTGAGACAGCAATTACAGGATGTTGGTAAAAAGCCTGTCGGGGCCCTGCATTACAACAGAGATGGTTCTGTCAATAACAGTCGTTGTACTTGTATTGCTTGGGTTCCTGGAGGCGATGGTTCTTTCGTTGTTTCTCATGCTGATGGGAATTTGTACGTATATGAAAAGAACAAAGATGGCGCTGGTGATTCTTCTTTCCCAGTTGTAAAGGATCAAACTCAGTTTTCGGTTGCCCATGCACGTTACAGTAAGAGTAATCCTATAGCGAGATGGCATATATGCCAGGGTTCAATTAATAGTATTTCTTTCTCGATGGATGGGGCATTCTTAGCAACTGTTGGGCGAGATGGTTATTTACGAGTGTTTGATTACTCAAAAGAACAACTTATATGTGGCGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAGCATGGATGGAAAATATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACATAACTCATGGGTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCTCCAAATTCAAATGACAATGGAGAGACTATTATGTATCGTTTTGGTTCTGTTGGTCAGGATACACAATTGCTTCTATGGGACCTGGAAATGGACGAGATTGTAGTGCCCTTGAGACGGCCACCTGGTGGATCCCCAACTTACAGTACTGGAAGTCAGTCATCGCACTGGGACAATGTTGTACCATTAGGTACCTTGCAACCTGCTCCGAGTATGCTGGATGTTCCAAAAATCTCACCGTTGGTTGCTCACCGTGTGCATACTGAACCACTCTCTGGCTTGATATTTACCCAGGAATCTGTGCTTACTGCCTGCCGGGAGGGGCATATTAAAATCTGGATGAGGCCAGGGGTTGCTGAGAGCCAATCTAGCACCTCTGAAAACTTGTTAGCTACCAATCTCAAGGAGAAGCCTTCACTTTCAAGCAAGATCAGCAGCAATTCTAGCTACAAGCAATGA

Predicted protein sequences of Glyma19g36480

Limit To All Plant Sequences

>Glyma19g36480.1   sequence type=predicted peptide   gene model=Glyma19g36480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMNTANGTMMSPSSSSVTAQSPGLKTYFKTPEGRYKLHYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGGNTRIGSIGASSTSSAMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKPVGALHYNRDGSVNNSRCTCIAWVPGGDGSFVVSHADGNLYVYEKNKDGAGDSSFPVVKDQTQFSVAHARYSKSNPIARWHICQGSINSISFSMDGAFLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMLDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKIWMRPGVAESQSSTSENLLATNLKEKPSLSSKISSNSSYKQ*

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