Glyma19g36460 - SoyBase

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Report for Sequence Feature Glyma19g36460

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43740506
stop:	43745692
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g36460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03160	AT	Annotation by Michelle Graham. TAIR10: homolog of mamallian P58IPK \| chr5:750286-752671 FORWARD LENGTH=482	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005788	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum lumen	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
KOG0550	KOG	Molecular chaperone (DnaJ superfamily)	JGI		ISS
PTHR24078	Panther	DNAJ HOMOLOG SUBFAMILY C MEMBER	JGI		ISS
PTHR24078:SF56	Panther		JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
PF07719	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_G7L2R8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DnaJ homolog subfamily C member-like protein n=1 Tax=Medicago truncatula RepID=G7L2R8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NA82	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NA82_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g36460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36460

Paralog	Evidence	Comments
Glyma03g33710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g180600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g36460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g36460

Limit To All Plant Sequences

>Glyma19g36460.1   sequence type=CDS   gene model=Glyma19g36460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCAATGTTATCGGTTTCTCGTTGTTGACGATGGATTCGGTGGCGTACAGGGGATTGCTCTACACATTCTTCATACTCAATTTTGTTTTGGTCTGCCAACTCATTCTCCTTCAACCTCTCGTCTCTGCTTCTGATGGAAAACCTGAAAATGCTGCTGAGTTGTTTGAGCGTGCATCACAGAGCATAAAAGTGAAAGATTATACTGAGGCACTTGATGATCTAAATGCTGCGATAGAAGCAGACCCAACCCTTTCAAAAGCATACCTTTTCAGAGCCTCAGTTCTTCGTCAGTTATGCAGATATGAGCAATCTGAGAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCTGGAGATTCAGCTGCAGAAAAGGAGCTCTCTCAACTATTGCAGGCTCAAAGTGCTCTGGAAACAGCTCAGTCCCTCTATGATTCGGGCAACTTCTCAAAATCTTTGGAATACATTGATAAAGTTGTTCTTGTTTTTTCTTCAGCTTGCAATAAGGCTAAGCTTCTTAAAGTGAAAGTGTTAATTGCTGATAAAGAGTATGAGAGTGCTATTGCTGAGTCTGGTTTTCTTCTTAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTACGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACGAGGCATTTTCAGAAAGGTCTCCGCCTAGATCCAGAGCATAGTGAACTGAAAAAGGCATATTTTGGATTGAAAAATCTACTAAAAAAGAGTAAAAGTGCTGAAGATAATGCTAGTAAGGGTAAACTACGTGTGGCAGTGGAGGAATTCAAAGCTGCACTTGCTGTTGACCCTATACATCTTGCACACAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGACAGTTGTAGTGAAGTTCTTAAGATTGATGAGGAGCTTGTGGAAGCTCTTGTTCAGAGAGGAGAAGCTAAACTCTTAACAGAAGATTGGGAGGGAGCTGTGGAGGATCTGAGATCAGCTGCTCAAAAATTGCCTCAGGATATGAATATCCGTGAAGCAGTAATGAGGGCCGAGAAAGCTTTAAAGATAAGCAAACGCAAGGACTACTACAAAATTTTGGGAATTTCAAAAACAGCTTCGGCTGCTGATATAAAACGTGCCTACAAGAAACTCGCCTTACAATGGCATCCAGATAAGAACGTCGACAAGAGGGAAGAAGCAGAGGCTAAATTCCGAGAAATTGCTGCTGCTTATGAGGTTCTCAGCGATGAAGACAAGCGTGTAAGATATGACAGAGGGGAGGACCTTGAAGAGATGGGAACGGGCGGTGGCGGCGGCGGCGGTGGTTTCAACCCTTTTGGTGGTGGGGGGTATACATATACTTTTGAGGGTGGCTTCCCTGGTGGTGGCTTTGGAGGAGGCTTTCCCGGTGGTGGATTTGGAGGGGGCTTTCCCGGCGGTGGCGGTGGCGGTGGATTTGAGTTCCATTTTTGA

Predicted protein sequences of Glyma19g36460

Limit To All Plant Sequences

>Glyma19g36460.1   sequence type=predicted peptide   gene model=Glyma19g36460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFNVIGFSLLTMDSVAYRGLLYTFFILNFVLVCQLILLQPLVSASDGKPENAAELFERASQSIKVKDYTEALDDLNAAIEADPTLSKAYLFRASVLRQLCRYEQSERSYKKFLELKPGDSAAEKELSQLLQAQSALETAQSLYDSGNFSKSLEYIDKVVLVFSSACNKAKLLKVKVLIADKEYESAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVAVEEFKAALAVDPIHLAHNVHLHLGLCKVLVKLGRGKDALDSCSEVLKIDEELVEALVQRGEAKLLTEDWEGAVEDLRSAAQKLPQDMNIREAVMRAEKALKISKRKDYYKILGISKTASAADIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEVLSDEDKRVRYDRGEDLEEMGTGGGGGGGGFNPFGGGGYTYTFEGGFPGGGFGGGFPGGGFGGGFPGGGGGGGFEFHF*

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