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Report for Sequence Feature Glyma19g36421

Feature Type:gene_model
Chromosome:Gm19
Start:43701529
stop:43703433
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g36421
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G69490AT Annotation by Michelle Graham. TAIR10: NAC-like, activated by AP3/PI | chr1:26122233-26123222 FORWARD LENGTH=268 SoyBaseE_val: 5.00E-82ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007275GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organismal development SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009825GO-bp Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0045087GO-bp Annotation by Michelle Graham. GO Biological Process: innate immune response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF02365PFAM No apical meristem (NAM) protein JGI ISS
UniRef100_G7L2R0UniRef Annotation by Michelle Graham. Best UniRef hit: NAC domain transcription factor n=1 Tax=Medicago truncatula RepID=G7L2R0_MEDTR SoyBaseE_val: 7.00E-180ISS
UniRef100_G7L2R0UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAC domain transcription factor n=1 Tax=Medicago truncatula RepID=G7L2R0_MEDTR SoyBaseE_val: 7.00E-180ISS

Expression Patterns of Glyma19g36421
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g36421 not represented in the dataset
Glyma19g36421 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36421
ParalogEvidenceComments
Glyma03g33690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36421 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g180300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g36421
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g36421
>Glyma19g36421.1   sequence type=CDS   gene model=Glyma19g36421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCATGGACAAAGATGCTAATTCAGAAATCCAACTCCCTCCTGGATTTAGATTCCACCCTTCTGATGAGGAGCTAATTGTTCACTATCTGAGAAACAAAGTGACATCATCACCCCTTCCTGCTTCATTCATAGCAGAAATAGATCTTTACAAGTATAATCCATGGGAGCTCCCAAGCAAAGCTTTGTTTGGGGAGGATGAGTGGTATTTCTTTACTCCTAGAGACAGGAAGTATCCCAATGGAGTGAGGCCTAATAGAGCAGCTGCTTCTGGTTATTGGAAAGCTACTGGGACTGACAAACCCATTTTCACTTCCTGTGGGATGAAGAGCATTGCTGTGAAGAAGGCACTCGTGTTCTACAAGGGTCGTCCACCAAAGGGATCGAAAACCGACTGGATCATGCATGAGTATAGATTGCATGATTCCACGATCTCCAATTCAAAGCAAGGAGGGACCATGAGACTGGATGAGTGGGTGCTGTGCCGGGTTCGACAAAAGACTATCAGCCCAAGAAGCCTTTGGGAAGACTCAAATGAACCCATTTATGAACCAACAAGCTACTTTCAACAAATGAGCGAGAAATCAAATCCTGAACCAGTCAAAAACTCTCTGCATAGTGAATATCCAATGTTGCCTTATATTCTGGCTTCTAAGAGTGCTCTGCCTAATTCTATTGACATGGCCTCAAGCTCGAGCTTTGGCTGTAATGATGATGTGAAAGCATATGCTTCATTGCATGATGGCAACTTAAATAATATAATAATAGGAGCACAGTTCATAGCACCTGTAGCTGAGGACTTGTTTAATCCTCTGAAGAGAAGAAACATTGAAGAGAACGAGTTGGACTTGTATGCTCCCCTCAATAAAAAACTAAACGAAGAAGTTGATGTTGGGAAGCAAATACTTGAGAAAGATGTCAACAAAGGCTACAATTTCAATAACTTTGACCAGTGGACTTCCATCATACAACCCCAAGAGTTTAATAGCTTGGCCTTTACGAAATATGCATGA
Predicted protein sequences of Glyma19g36421
>Glyma19g36421.1   sequence type=predicted peptide   gene model=Glyma19g36421   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFMDKDANSEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEIDLYKYNPWELPSKALFGEDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDKPIFTSCGMKSIAVKKALVFYKGRPPKGSKTDWIMHEYRLHDSTISNSKQGGTMRLDEWVLCRVRQKTISPRSLWEDSNEPIYEPTSYFQQMSEKSNPEPVKNSLHSEYPMLPYILASKSALPNSIDMASSSSFGCNDDVKAYASLHDGNLNNIIIGAQFIAPVAEDLFNPLKRRNIEENELDLYAPLNKKLNEEVDVGKQILEKDVNKGYNFNNFDQWTSIIQPQEFNSLAFTKYA*






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