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Report for Sequence Feature Glyma19g36330

Feature Type:gene_model
Chromosome:Gm19
Start:43649197
stop:43652222
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g36330
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37110AT Annotation by Michelle Graham. TAIR10: PLAC8 family protein | chr2:15592689-15593726 FORWARD LENGTH=242 SoyBaseE_val: 1.00E-106ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR15907Panther FAMILY NOT NAMED JGI ISS
PTHR15907:SF11Panther SUBFAMILY NOT NAMED JGI ISS
PF04749PFAM PLAC8 family JGI ISS
UniRef100_I1NA70UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NA70_SOYBN SoyBaseE_val: 3.00E-166ISS
UniRef100_Q6ULR9UniRef Annotation by Michelle Graham. Most informative UniRef hit: SAT5 n=5 Tax=Papilionoideae RepID=Q6ULR9_PEA SoyBaseE_val: 1.00E-120ISS

Expression Patterns of Glyma19g36330
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36330
ParalogEvidenceComments
Glyma03g33620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36330 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g179500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g36330
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g36330
>Glyma19g36330.1   sequence type=CDS   gene model=Glyma19g36330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGATAATAAGCAACCCAATCACGAGGAGGCAAGTCCTCTTCTCCACCAGTCCCAACCCAAATCCGAACCACCAACGCCACCTGAGACTCCCGAGTTTCTTCTCGGATGGACCGCTGATGGGCTCCCGCTGGGCCACGGCAGCGTCGTGGGCCAGCCCATGGGCCGCGCCCCTTGGAACTCCTCCATCTGCGCCTGTCTCGGCCAAACCGATCACTTCTGCAGCAGCGATCTCGAAGTTTGTCTTCTTGGGAGTGTGGCTCCTTGCGTGCTGTATGGAAGCAATGTTGAGAGACTTGAATCTGCTCCTGGGACATTTGCCAATCACTGCTTGCCATATTCTGGAATGTATATAATTGGAAATTCCTGCTTTGGTTGGAATTGCCTTGCACCGTGGTTTTCCTATCCTAGCCGTACTGCTATTCGTCGCAGGTTCAATTTAGAGGGAAGTTGCGAAGCACTTAATAGATCATGCGGATGCTGCGGAAGCATTTTGGAAGATGAGGTGCAGCGTGAACAGTGTGAGTCAACATGTGACTTGGCAACTCATGTCTTCTGTCATGTATGTGCTCTTTGTCAAGAAGGTCGTGAGCTCCGTCGCAGGTTACCTCATCCTGGCTTTAATGCTCAACCAGTACTGGTTATGATTCCCCCAGGAGAGCAGACCATGGGACGTGAGGCTTGA
Predicted protein sequences of Glyma19g36330
>Glyma19g36330.1   sequence type=predicted peptide   gene model=Glyma19g36330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADNKQPNHEEASPLLHQSQPKSEPPTPPETPEFLLGWTADGLPLGHGSVVGQPMGRAPWNSSICACLGQTDHFCSSDLEVCLLGSVAPCVLYGSNVERLESAPGTFANHCLPYSGMYIIGNSCFGWNCLAPWFSYPSRTAIRRRFNLEGSCEALNRSCGCCGSILEDEVQREQCESTCDLATHVFCHVCALCQEGRELRRRLPHPGFNAQPVLVMIPPGEQTMGREA*






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