SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G02960 | AT | Annotation by Michelle Graham. TAIR10: Ribosomal protein S12/S23 family protein | chr5:693280-694396 REVERSE LENGTH=142 | SoyBase | E_val: 3.00E-93 | ISS |
| GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0015935 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit | SoyBase | N/A | ISS |
| GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
| GO:0022627 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG1749 | KOG | 40S ribosomal protein S23 | JGI | ISS | |
| PTHR11652 | Panther | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER | JGI | ISS | |
| PF00164 | PFAM | Ribosomal protein S12 | JGI | ISS | |
| UniRef100_I1L8S1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=3 Tax=Papilionoideae RepID=I1L8S1_SOYBN | SoyBase | E_val: 1.00E-97 | ISS |
| UniRef100_Q9M5Z9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S23 n=1 Tax=Euphorbia esula RepID=RS23_EUPES | SoyBase | E_val: 8.00E-97 | ISS |
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Glyma19g36250 not represented in the dataset |
Glyma19g36250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g33530 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g178800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g36250.2 sequence type=transcript gene model=Glyma19g36250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTGACATAATAGCCTTCAATCTTTATATAAACACCACGACACTCCTTATTCAGGGTTAGGGTTTTACACTGCGGCAGCTACTTCGGCTCCATCTTCTTCGATCTCTCAAACTCTATCGGCGCAGAACCAATCCTATATCACTATGGGGAAGACACATGGAATGGGAGCTGCCCGCAAGCTGAAGTCTCACCGTAGGAGACAAAGAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGAAAATGTGCCAGGGTTCAACTCATCAAAAATGGGAAGAAGATTGCTGCATTCGTGCCAAATGATGGTTGCTTAAATTACATTGAAGAGAATGATGAAGTCTTGATAGCTGGATTTGGACGAAAGGGTCATGCCGTGGGTGATATTCCTGGAGTCAGATTCAAGGTCGTGAAGGTTTCTGGTGTGTCTCTCCTGGCTCTCTTCAAGGAGAAGAAAGAGAAGCCTAGGTCTTAGTCTTGTGGGACGTGTCCTCTCTAGTTTCTCCAAAAAATTATTATGAATTTTACTTCATGAGACTGGATGAGTTCTATGGACAATTTTGTATCTCTCTGGTAGCAATTTTTCTGAACTAAATTTGGTTCATATCTCATACTTGGGCTCCATTTTTATAGAGAATGCTTTGTGTGAAGTTCGGTCAATTTTACCTCATTTGGTACTGTGAAATGGTCACTATATGGTTTTAAAATAATTTATTTTTGATTGAATGAAGAATTTTACAAAAGTAATGTATCTTTCGCACAAATTTAAAATCCTTCAATAAAATGATTTTGTTTGGTT
>Glyma19g36250.1 sequence type=CDS gene model=Glyma19g36250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAAGACACATGGAATGGGAGCTGCCCGCAAGCTGAAGTCTCACCGTAGGAGACAAAGGTGGGCTGACAAGTCATACAAAAAGTCTCATCTTGGAAATGAATGGAAGAAGCCTTTTGCTGGTTCATCCCATGCAAAGGGTATTGTTCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGAAAATGTGCCAGGGTTCAACTCATCAAAAATGGGAAGAAGATTGCTGCATTCGTGCCAAATGATGGTTGCTTAAATTACATTGAAGAGAATGATGAAGTCTTGATAGCTGGATTTGGACGAAAGGGTCATGCCGTGGGTGATATTCCTGGAGTCAGATTCAAGGTCGTGAAGGTTTCTGGTGTGTCTCTCCTGGCTCTCTTCAAGGAGAAGAAAGAGAAGCCTAGGTCTTAG >Glyma19g36250.2 sequence type=CDS gene model=Glyma19g36250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAAGACACATGGAATGGGAGCTGCCCGCAAGCTGAAGTCTCACCGTAGGAGACAAAGAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGAAAATGTGCCAGGGTTCAACTCATCAAAAATGGGAAGAAGATTGCTGCATTCGTGCCAAATGATGGTTGCTTAAATTACATTGAAGAGAATGATGAAGTCTTGATAGCTGGATTTGGACGAAAGGGTCATGCCGTGGGTGATATTCCTGGAGTCAGATTCAAGGTCGTGAAGGTTTCTGGTGTGTCTCTCCTGGCTCTCTTCAAGGAGAAGAAAGAGAAGCCTAGGTCTTAG
>Glyma19g36250.1 sequence type=predicted peptide gene model=Glyma19g36250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKTHGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* >Glyma19g36250.2 sequence type=predicted peptide gene model=Glyma19g36250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKTHGMGAARKLKSHRRRQRGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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