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Report for Sequence Feature Glyma19g36241

Feature Type:gene_model
Chromosome:Gm19
Start:43587780
stop:43592196
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G53320AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37070.1); Has 11044 Blast hits to 5993 proteins in 551 species: Archae - 8; Bacteria - 1486; Metazoa - 4078; Fungi - 1814; Plants - 348; Viruses - 112; Other Eukaryotes - 3198 (source: NCBI BLink). | chr3:19769397-19772278 REVERSE LENGTH=553 SoyBaseE_val: 2.00E-32ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1NA58UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NA58_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g36241 not represented in the dataset

Glyma19g36241 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma03g33516 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g178700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g36241.1   sequence type=CDS   gene model=Glyma19g36241   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTCCGAACCGGCGAGTTCCCTGAGAAAGAGCAACTTCCAAGACCGGCGCCTCAGCATCATCGACGTTTCCTCCGCCGACGATTCGCTTCTCGATGGAAACCCTCTCAGCCACCAACGTTCAGAGAACCAAGAGCAGGCCGATGTGTTGTACACGCCGAACTCGAAGAAGTTCGAAGACGCCGCCACCAAACTCCAACAATGGGACCACGAGCCTCACTCCAACGACTCATCCGGAATCGGAAAACCTAAGAAAAACAGCAAATGCAATCTGCGCAAGAGTTTAGCCTGGGACAGTGCCTTTTTCACCAGCGCCGGGGTTTTGGATCCGGAGGAGTTGACTATTATAATTGAAGGTGTTGAGAAGGATGAGAAGCCTGAATTACCGTCTATTCAAGAGGATGTGTACAAGTCGTGTGAGTCCATTTCTACGTTAGCGAGTGATAGCTTGACCTTTGAAAGTGTGGAGATGGAGGGTGATTTATTTGAGGATGTAAGAGCTTCAATTCAGAAATCTAGCAAAAAGTCCAGCCCTGCAGCGTCAAACATCAAAGTGCCATCTTCCCCTTCGGTTCCATTGTTCCAAACTCATGACTCTTCGAAAAAGGTTGGCATGGTTTCTTGCAATAAGATGAAGGTCCCACCTGCTTCTAAGAATCCAAGTGCTGGCATGCAAGGATTTGGGAAAATGACGAAGAAGAATAATCCTATTTTCCCCCAAATTCCACAGAAGCATGTGGCTACAAGGAGAGAGTCATCTATTTTAATGCAATCAAAGGTACCCGGAAGGTCTAGTTTAAGTTCCACAATTCCATCCAAGAGAGATTCACTTGGCAATCCACATGTCAAAAGTGAAAGGGACAAGGCAAAACGAATAGTTGGTGATAGAGTCAGTTCAGTGGCAAAAGCATCTGTTGTTAGAGGTTCTCGAGGTTCTGTGCCTAAGCCCACACTACCATCCAAATCACCTTCTGGTCCGACAGTATCAACCAGGACTAAATCAGTGACTTCCACATCTTCTGTTGTCAAAACACCTTCAAGGGTTGCTTCAAGAAATAAAGCTGAACCTGAGATTTCTAGTCTTTCAAGGTTGATGTCTGCCACAAAGCTTTCTTCTAGTATTTCGCCCGCTAGCTCTATCAGTGACTGGTCTTCATCAGAGTCATCCTCAACAACTTCTATGGCTAAACGTGTGTGTAATAGTTCAAGGCCCAGCATTGATTGTGGGTCAAGCAGAAAGGTTTTATTGAACACTGATGCAGATCAAGGTACACACCCTCAGACTCCTCTGAGTGATTCAAGCTTAGAAAGGCAAGAGGCTCGGCAAAGTGGGATTATTAGTCAGAAGGAAAGGACAGTGCCTGGAGCGACAGTTCTTCCTCCAGTTTCCAAGAAACCTTCAGGCCTTCGACTGCCTTCACCAAAGATTGGTTATTTTGATGGGGTGAAGCCCTTAGTGCGCACTCCACGTGGGTCTGTTGTACCTGGTGGCTTGCCAAAACATGGAGCTGAAAGTCCAAGAGAAGGCCAAAACAAAGCAGAACTTGGAAAGCTGCAACCATCCAGATCTTTTGTTTCAATTGATAATACAAAACCCAACAACCAGCAACCTCCACATCCAAATCCTTTTCATGAATCATTAGATGTTGCAATTAAGACATCTAATAGCGTGCAGAATGGCAAAAGCTCTTCCGACATATCCATTGGTGCTGTTGAAAATACATCACACTTCCATGTAGTGGAGAAAGCTCATCATGATTTGCCACCACTTAAGGGTGTCAATAACCAGGAAAATGCTCATCATGATGATCAAATTGATTGTTTGAGCAAACAAGTTGGACATATGGACATAAATTTTGAGATAGGGGAAAAGTTTAATAGTGATTCCCTTTATTTATTGCAGAATGATATCAGCTTCCAAGATAAATCCAATGGTCTGGATTTATCTAGTCACAAAGAGCTTATTGATTGTCCTAAGAAAGACGAATTATTTAATGGTTTATCTACTACATACCTTTATGTCTCCCCAACCAGCTTTGATGTGGTAGCTTCAACAAGGAGACCCTTTGCGGTCAAAGATTCCTTTTGTAACATGGATGGTGTTGTCTTTACAGATTCAACAGTTTCAGAGGCTAAATCGACCAACTTGCCTGTGCCGGAGAGCATTATTATGAAAGAAAACGAGTGA

>Glyma19g36241.1   sequence type=predicted peptide   gene model=Glyma19g36241   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISEPASSLRKSNFQDRRLSIIDVSSADDSLLDGNPLSHQRSENQEQADVLYTPNSKKFEDAATKLQQWDHEPHSNDSSGIGKPKKNSKCNLRKSLAWDSAFFTSAGVLDPEELTIIIEGVEKDEKPELPSIQEDVYKSCESISTLASDSLTFESVEMEGDLFEDVRASIQKSSKKSSPAASNIKVPSSPSVPLFQTHDSSKKVGMVSCNKMKVPPASKNPSAGMQGFGKMTKKNNPIFPQIPQKHVATRRESSILMQSKVPGRSSLSSTIPSKRDSLGNPHVKSERDKAKRIVGDRVSSVAKASVVRGSRGSVPKPTLPSKSPSGPTVSTRTKSVTSTSSVVKTPSRVASRNKAEPEISSLSRLMSATKLSSSISPASSISDWSSSESSSTTSMAKRVCNSSRPSIDCGSSRKVLLNTDADQGTHPQTPLSDSSLERQEARQSGIISQKERTVPGATVLPPVSKKPSGLRLPSPKIGYFDGVKPLVRTPRGSVVPGGLPKHGAESPREGQNKAELGKLQPSRSFVSIDNTKPNNQQPPHPNPFHESLDVAIKTSNSVQNGKSSSDISIGAVENTSHFHVVEKAHHDLPPLKGVNNQENAHHDDQIDCLSKQVGHMDINFEIGEKFNSDSLYLLQNDISFQDKSNGLDLSSHKELIDCPKKDELFNGLSTTYLYVSPTSFDVVASTRRPFAVKDSFCNMDGVVFTDSTVSEAKSTNLPVPESIIMKENE*







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