Glyma19g36230 - SoyBase

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Report for Sequence Feature Glyma19g36230

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43574297
stop:	43583964
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g36230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09660	AT	Annotation by Michelle Graham. TAIR10: minichromosome maintenance 8 \| chr3:2961314-2966166 REVERSE LENGTH=777	SoyBase	E_val: 0	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006270	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication initiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008094	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0480	KOG	DNA replication licensing factor, MCM6 component	JGI		ISS
PTHR11630	Panther	DNA REPLICATION LICENSING FACTOR	JGI		ISS
PTHR11630:SF47	Panther	DNA REPLICATION LICENSING FACTOR MCM8	JGI		ISS
PF00493	PFAM	MCM2/3/5 family	JGI		ISS
UniRef100_G7L1Q5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA replication licensing factor MCM6 n=1 Tax=Medicago truncatula RepID=G7L1Q5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F5B4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F5B4 related cluster n=1 Tax=unknown RepID=UPI000233F5B4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g36230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36230

Paralog	Evidence	Comments
Glyma03g33503	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g178600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g36230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g36230

Limit To All Plant Sequences

>Glyma19g36230.3   sequence type=transcript   gene model=Glyma19g36230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTCTCAATTTTCCCGCCAAGAAAAAAAGAGCGGCGAAGAACGTCGTCGGAAACGGGATGCACGGAACACCAGAAGAAGAGACGGAGCAGAGGATCGGATAAGGTTTCGGATCCGTATCCATGGATCCGTTCGTGTTAATGGATATACTTGGCACTTACTTTCCTCAGCAACTCTTCACCGTCGATGATATCTTGCTCAATCTCACTTCTGCTCTTCTTTCCTTCTTCTCTTCACCGCCGGGACAAAACCTCGTTTCTCAGGTGAAAAATGATTATGGCAACTACGTCTTGTCACTCGACTTTCTGCAGTTGCAACAAATATGTCATGTTGAGGAATTTTATAAAATGTTAACGGAGAAACCTAAAATTGCTCTCTTATGTATGAGTGCGGCTGTTCATAAGGTTTTGCTTTCCAAATGGGAGAATGGCGATCTAGAGCATGGTGCAAAGGTAGATATTCGTCTTCATAACTGTCCTGAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTATATTGACAAGCTTGTCTCAGTTCGTGGTACTGCTGTGAAAGTCAGCACTGTCAGACCTCTGGTGGTGGAAATGAGTTTTGAATGCAGTAAATGTAAACAATCAATTACACGTATATTTCCTGATGGGAAATATTCTCCACCATCTACGTGCAATTTGAATGGCTGCAAGAGCAAATTCTTTAATCCGTTGCGATCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAGCCTGAAGACCATGAAGAAGGACGGGTGCCTCGAACAGTGGAATGCGAGCTTACCCAAGATCTCGTTGATGCGTGCATACCTGGAGATGTGGTGACTGTTACTGGAATTATAAGAGGAATTAACACTTACATGGATATTGGAGGAGGGAAGTCAAAGAACAAAAACCAAGGATTTTACTATTTGTACCTTGAAGCTGTATCCATAAAAAATTCAAAGTCACAGTCTGTACCTGAGGATCTGCCAGATTCTAACCCCAAAGCCAGACCAACTGAGCTGTTTGATTTGTTTTCGTTTTCTTCAAAGGATTTAGAATTTGTTGCGAAGTTTGCGCAGGAGCATGGTTCAGATTTATTTCGGCAAATCCTACAATCTATATGCCCGTCCATCTATGGGCATGAGCTTGTTAAAGCTGGGATAACTCTGGCATTATTTGGTGGTGTACGAAAGCATTCCATGGATCAGAATAAGGTTCCTGTCAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGTCTAGGTAAGAGCCAGTTACTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAATGCAACAACCAGAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCCATGACAAGTGACTATGCTTTTGAGGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGACGAGTTTGATAAAATGTCAACAGAGCATCAGGCTTTACTCGAGGCGATGGAGCAACAGTGTGTCTCTATTGCAAAGGCGGGATTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCGGCTGCAAACCCCGCTGGTGGTCACTATAACCGAGCAAAAACTGTAAATGAAAATTTGAAAATGAGTGCTGCTCTCCTGTCTCGTTTCGATTTAATTTTCATACTGCTGGATAAACCCGATGAACTTCAGGACAAGCGACTCTCGGAGCACATTATGGCACTTCATGGTGGAAATGCACAACATTCACCGGTGTTGAAAAAGCGACGTGGAGATCCATCTGATTCCATAGCTGGTGTATCACAGAATGCCGAAGGTTTTGATCTGGGCGTTAGATCTGGGTCTTTAATTTCAAGTTTGAGACTTGACCCCCAAAGAGACTGTGACTTTGTTCCATTACCTGGTCAACTTCTTCGCAAATACATTGCTTATGCAAGGAGTTTTGTCTTTCCTAGGATGACAAAGCCAGCAGCAGAAATCTTGCAAAAGTTTTACCTAAAACTGAGAGATCATAATACTTCAGCTGACGGTACTCCTATCACAGCTAGGCAGCTGGAAAGTCTTGTAAGGCTAGCTGAAGCTCGGGCTCGGCTAGACTTGAGAGTAGAAATAACGACCCAGGATGCAACGGATGTTGTTGAAATCATGAAGGAATCCCTGTATGATAAATATGTTGATGAGCATGGTGTCGTGGATTTCGGTCGAAGTGGTGGGATGAGTCAACAGAAAGAGGCAAAACGCTTTCTAAATGCCCTAAACAAGCAATCGGAACTGGAACAGAAGGATTGCTTTTCAGTATCTTTTGGCGGATAGGATTTGTTTGAAAGTTCCTGATATTGACACTTTCATTGAAAATTTAAACAGTGTTGGTTATCTACTAAAAAAAGGACCAAAGACATACCAGGTTTTATCCTCTTCCTACGCACGAAGCCAACCGTTTAGGACAAGGGACTAAACTGAATTTGAGCGGTCTACAAACATTTTTTCCTTATACTGAAGATCCCCTTACAGTCTACATTACTAGCTCTAGTAACAACTTCGTCCTATGATTGTTATATGCCATGTCATGTACGGGGACAGGGTAACTAATCTCCCATGGTGTAAGTTCTATCTAACGTAAGTTTGTAGTAAAAGTATAAGATTGCGTAACAAGGCTACCAATCATTTACTAGGTGAGACAAGAAATTCATTAGCAGTGCACAATTAGGGTCAGAATGAAAAAAAGTGTACAATTAGGGCAGAAGCCGAATCACTTCTCATCTCAATTTCTTTTTGCTGACATTATAAAATAAAATGTTTTTTTTAAAGCATACACTATGAAGGGCCAAGATTTGGGGTCGATAA

Coding sequences of Glyma19g36230

Limit To All Plant Sequences

>Glyma19g36230.2   sequence type=CDS   gene model=Glyma19g36230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCGTTCGTGTTAATGGATATACTTGGCACTTACTTTCCTCAGCAACTCTTCACCGTCGATGATATCTTGCTCAATCTCACTTCTGCTCTTCTTTCCTTCTTCTCTTCACCGCCGGGACAAAACCTCGTTTCTCAGGTGAAAAATGATTATGGCAACTACGTCTTGTCACTCGACTTTCTGCAGTTGCAACAAATATGTCATGTTGAGGAATTTTATAAAATGTTAACGGAGAAACCTAAAATTGCTCTCTTATGTATGAGTGCGGCTGTTCATAAGGTTTTGCTTTCCAAATGGGAGAATGGCGATCTAGAGCATGGTGCAAAGGTAGATATTCGTCTTCATAACTGTCCTGAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTATATTGACAAGCTTGTCTCAGTTCGTGGTACTGCTGTGAAAGTCAGCACTGTCAGACCTCTGGTGGTGGAAATGAGTTTTGAATGCAGTAAATGTAAACAATCAATTACACGTATATTTCCTGATGGGAAATATTCTCCACCATCTACGTGCAATTTGAATGGCTGCAAGAGCAAATTCTTTAATCCGTTGCGATCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAGCCTGAAGACCATGAAGAAGGACGGGTGCCTCGAACAGTGGAATGCGAGCTTACCCAAGATCTCGTTGATGCGTGCATACCTGGAGATGTGGTGACTGTTACTGGAATTATAAGAGGAATTAACACTTACATGGATATTGGAGGAGGGAAGTCAAAGAACAAAAACCAAGGATTTTACTATTTGTACCTTGAAGCTGTATCCATAAAAAATTCAAAGTCACAGTCTGTACCTGAGGATCTGCCAGATTCTAACCCCAAAGCCAGACCAACTGAGCTGTTTGATTTGTTTTCGTTTTCTTCAAAGGATTTAGAATTTGTTGCGAAGTTTGCGCAGGAGCATGGTTCAGATTTATTTCGGCAAATCCTACAATCTATATGCCCGTCCATCTATGGGCATGAGCTTGTTAAAGCTGGGATAACTCTGGCATTATTTGGTGGTGTACGAAAGCATTCCATGGATCAGAATAAGGTTCCTGTCAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGTCTAGGTAAGAGCCAGTTACTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAATGCAACAACCAGAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCCATGACAAGTGACTATGCTTTTGAGGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGACGAGTTTGATAAAATGTCAACAGAGCATCAGGCTTTACTCGAGGCGATGGAGCAACAGTGTGTCTCTATTGCAAAGGCGGGATTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCGGCTGCAAACCCCGCTGGTGGTCACTATAACCGAGCAAAAACTGTAAATGAAAATTTGAAAATGAGTGCTGCTCTCCTGTCTCGTTTCGATTTAATTTTCATACTGCTGGATAAACCCGATGAACTTCAGGACAAGCGACTCTCGGAGCACATTATGGCACTTCATGGTGGAAATGCACAACATTCACCGGTGTTGAAAAAGCGACGTGGAGATCCATCTGATTCCATAGCTGGTGTATCACAGAATGCCGAAGGTTTTGATCTGGGCGTTAGATCTGGGTCTTTAATTTCAAGTTTGAGACTTGACCCCCAAAGAGACTGTGACTTTGTTCCATTACCTGGTCAACTTCTTCGCAAATACATTGCTTATGCAAGGAGTTTTGTCTTTCCTAGGATGACAAAGCCAGCAGCAGAAATCTTGCAAAAGTTTTACCTAAAACTGAGAGATCATAATACTTCAGCTGACGGTACTCCTATCACAGCTAGGCAGCTGGAAAGTCTTGTAAGGCTAGCTGAAGCTCGGGCTCGGCTAGACTTGAGAGTAGAAATAACGACCCAGGATGCAACGGATGTTGTTGAAATCATGAAGGAATCCCTGTATGATAAATATGTTGATGAGCATGGTGTCGTGGATTTCGGTCGAAGTGGTGGGATGAGTCAACAGAAAGAGGCAAAACGCTTTCTAAATGCCCTAAACAAGCAATCGGAACTGGAACAGAAGGATTGCTTTTCAGTATCTGAAATATACAGTTTGGCGGATAGGATTTGTTTGAAAGTTCCTGATATTGACACTTTCATTGAAAATTTAAACAGTGTTGGTTATCTACTAAAAAAAGGACCAAAGACATACCAGGTTTTATCCTCTTCCTACGCACGAAGCCAACCGTTTAGGACAAGGGACTAA

>Glyma19g36230.3   sequence type=CDS   gene model=Glyma19g36230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCGTTCGTGTTAATGGATATACTTGGCACTTACTTTCCTCAGCAACTCTTCACCGTCGATGATATCTTGCTCAATCTCACTTCTGCTCTTCTTTCCTTCTTCTCTTCACCGCCGGGACAAAACCTCGTTTCTCAGGTGAAAAATGATTATGGCAACTACGTCTTGTCACTCGACTTTCTGCAGTTGCAACAAATATGTCATGTTGAGGAATTTTATAAAATGTTAACGGAGAAACCTAAAATTGCTCTCTTATGTATGAGTGCGGCTGTTCATAAGGTTTTGCTTTCCAAATGGGAGAATGGCGATCTAGAGCATGGTGCAAAGGTAGATATTCGTCTTCATAACTGTCCTGAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTATATTGACAAGCTTGTCTCAGTTCGTGGTACTGCTGTGAAAGTCAGCACTGTCAGACCTCTGGTGGTGGAAATGAGTTTTGAATGCAGTAAATGTAAACAATCAATTACACGTATATTTCCTGATGGGAAATATTCTCCACCATCTACGTGCAATTTGAATGGCTGCAAGAGCAAATTCTTTAATCCGTTGCGATCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAGCCTGAAGACCATGAAGAAGGACGGGTGCCTCGAACAGTGGAATGCGAGCTTACCCAAGATCTCGTTGATGCGTGCATACCTGGAGATGTGGTGACTGTTACTGGAATTATAAGAGGAATTAACACTTACATGGATATTGGAGGAGGGAAGTCAAAGAACAAAAACCAAGGATTTTACTATTTGTACCTTGAAGCTGTATCCATAAAAAATTCAAAGTCACAGTCTGTACCTGAGGATCTGCCAGATTCTAACCCCAAAGCCAGACCAACTGAGCTGTTTGATTTGTTTTCGTTTTCTTCAAAGGATTTAGAATTTGTTGCGAAGTTTGCGCAGGAGCATGGTTCAGATTTATTTCGGCAAATCCTACAATCTATATGCCCGTCCATCTATGGGCATGAGCTTGTTAAAGCTGGGATAACTCTGGCATTATTTGGTGGTGTACGAAAGCATTCCATGGATCAGAATAAGGTTCCTGTCAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGTCTAGGTAAGAGCCAGTTACTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAATGCAACAACCAGAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCCATGACAAGTGACTATGCTTTTGAGGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGACGAGTTTGATAAAATGTCAACAGAGCATCAGGCTTTACTCGAGGCGATGGAGCAACAGTGTGTCTCTATTGCAAAGGCGGGATTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCGGCTGCAAACCCCGCTGGTGGTCACTATAACCGAGCAAAAACTGTAAATGAAAATTTGAAAATGAGTGCTGCTCTCCTGTCTCGTTTCGATTTAATTTTCATACTGCTGGATAAACCCGATGAACTTCAGGACAAGCGACTCTCGGAGCACATTATGGCACTTCATGGTGGAAATGCACAACATTCACCGGTGTTGAAAAAGCGACGTGGAGATCCATCTGATTCCATAGCTGGTGTATCACAGAATGCCGAAGGTTTTGATCTGGGCGTTAGATCTGGGTCTTTAATTTCAAGTTTGAGACTTGACCCCCAAAGAGACTGTGACTTTGTTCCATTACCTGGTCAACTTCTTCGCAAATACATTGCTTATGCAAGGAGTTTTGTCTTTCCTAGGATGACAAAGCCAGCAGCAGAAATCTTGCAAAAGTTTTACCTAAAACTGAGAGATCATAATACTTCAGCTGACGGTACTCCTATCACAGCTAGGCAGCTGGAAAGTCTTGTAAGGCTAGCTGAAGCTCGGGCTCGGCTAGACTTGAGAGTAGAAATAACGACCCAGGATGCAACGGATGTTGTTGAAATCATGAAGGAATCCCTGTATGATAAATATGTTGATGAGCATGGTGTCGTGGATTTCGGTCGAAGTGGTGGGATGAGTCAACAGAAAGAGGCAAAACGCTTTCTAAATGCCCTAAACAAGCAATCGGAACTGGAACAGAAGGATTGCTTTTCAGTATCTTTTGGCGGATAG

Predicted protein sequences of Glyma19g36230

Limit To All Plant Sequences

>Glyma19g36230.2   sequence type=predicted peptide   gene model=Glyma19g36230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPFVLMDILGTYFPQQLFTVDDILLNLTSALLSFFSSPPGQNLVSQVKNDYGNYVLSLDFLQLQQICHVEEFYKMLTEKPKIALLCMSAAVHKVLLSKWENGDLEHGAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVEMSFECSKCKQSITRIFPDGKYSPPSTCNLNGCKSKFFNPLRSTAQTIDFQKIRVQELLKPEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNKNQGFYYLYLEAVSIKNSKSQSVPEDLPDSNPKARPTELFDLFSFSSKDLEFVAKFAQEHGSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTRAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSTEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELQDKRLSEHIMALHGGNAQHSPVLKKRRGDPSDSIAGVSQNAEGFDLGVRSGSLISSLRLDPQRDCDFVPLPGQLLRKYIAYARSFVFPRMTKPAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRVEITTQDATDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDCFSVSEIYSLADRICLKVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYARSQPFRTRD*

>Glyma19g36230.3   sequence type=predicted peptide   gene model=Glyma19g36230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPFVLMDILGTYFPQQLFTVDDILLNLTSALLSFFSSPPGQNLVSQVKNDYGNYVLSLDFLQLQQICHVEEFYKMLTEKPKIALLCMSAAVHKVLLSKWENGDLEHGAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVEMSFECSKCKQSITRIFPDGKYSPPSTCNLNGCKSKFFNPLRSTAQTIDFQKIRVQELLKPEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNKNQGFYYLYLEAVSIKNSKSQSVPEDLPDSNPKARPTELFDLFSFSSKDLEFVAKFAQEHGSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTRAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSTEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELQDKRLSEHIMALHGGNAQHSPVLKKRRGDPSDSIAGVSQNAEGFDLGVRSGSLISSLRLDPQRDCDFVPLPGQLLRKYIAYARSFVFPRMTKPAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRVEITTQDATDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDCFSVSFGG*

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