Glyma19g36220 - SoyBase

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Report for Sequence Feature Glyma19g36220

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43568769
stop:	43570137
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g36220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37060	AT	Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit B8 \| chr2:15576336-15577660 FORWARD LENGTH=173	SoyBase	E_val: 1.00E-77	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0869	KOG	CCAAT-binding factor, subunit A (HAP3)	JGI		ISS
PTHR11064	Panther	TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEIN	JGI		ISS
PTHR11064:SF9	Panther	CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A	JGI		ISS
PF00808	PFAM	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	JGI		ISS
UniRef100_G7L1Q2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nuclear transcription factor Y subunit B-3 n=1 Tax=Medicago truncatula RepID=G7L1Q2_MEDTR	SoyBase	E_val: 1.00E-99	ISS
UniRef100_I1NA56	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NA56_SOYBN	SoyBase	E_val: 4.00E-110	ISS

Expression Patterns of Glyma19g36220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g36220

Paralog	Evidence	Comments
Glyma03g33490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g36220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g178500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g36220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g36220

Limit To All Plant Sequences

>Glyma19g36220.2   sequence type=CDS   gene model=Glyma19g36220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACGAACGGTGGTGATAGGCTTCAGTCTAGATCTCAATCGTCTCCACCTTGCTTTCTTCTCCAGCGTCCGATTCTCTCACCGATCTCGCGCCAAATACAAATTCGTTACAACCCTACCCAGGGTTCCGGCGAGCATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGTAGCCACGAGAGCGGCGAGCACAGCCCTCGCTCTAACGTGCGCGAGCAGGACAGGTACCTCCCCATCGCTAACATAAGCCGCATCATGAAGAAGGCACTACCTGCGAACGGTAAAATCGCCAAGGACGCCAAAGAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGGGAAAAGAGAAAGACTATTAACGGTGATGATTTGCTCTGGGCCATGGCCACTCTTGGTTTTGAGGATTATATCGATCCTCTTAAAATTTACCTCACTAGATACAGAGAGGGTGATACGAAGGGTTCAGCCAAGGGCGGAGACTCATCTTCTAAGAAAGATGTTCAGCCAAGTCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAGTTACACAATTTCTCAGACTTTCTGTTTCCAACATTGA

Predicted protein sequences of Glyma19g36220

Limit To All Plant Sequences

>Glyma19g36220.2   sequence type=predicted peptide   gene model=Glyma19g36220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KRTVVIGFSLDLNRLHLAFFSSVRFSHRSRAKYKFVTTLPRVPASMADGPASPGGGSHESGEHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKGSAKGGDSSSKKDVQPSPNAQLAHQGSFSQGVSYTISQTFCFQH*

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