SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G09600 | AT | Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein | chr3:2946459-2948270 FORWARD LENGTH=298 | SoyBase | E_val: 9.00E-128 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009739 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus | SoyBase | N/A | ISS |
| GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0032922 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian regulation of gene expression | SoyBase | N/A | ISS |
| GO:0043966 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3 acetylation | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0048574 | GO-bp | Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| KOG0724 | KOG | Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains | JGI | ISS | |
| PTHR12802 | Panther | SWI/SNF COMPLEX-RELATED | JGI | ISS | |
| PTHR12802:SF3 | Panther | SWI/SNF COMPLEX-RELATED | JGI | ISS | |
| PF00249 | PFAM | Myb-like DNA-binding domain | JGI | ISS | |
| UniRef100_Q0PJJ0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB118 n=1 Tax=Glycine max RepID=Q0PJJ0_SOYBN | SoyBase | E_val: 3.00E-149 | ISS |
| UniRef100_UPI000233F5B2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F5B2 related cluster n=1 Tax=unknown RepID=UPI000233F5B2 | SoyBase | E_val: 0 | ISS |
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Glyma19g36170 not represented in the dataset |
Glyma19g36170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g33440 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g178000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g36170.1 sequence type=CDS gene model=Glyma19g36170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCATGAAGCCCTCAACTTCCACAAGTGGGTCTGGCAAGAAGATTAGAAAGCCTTATACTATTACCAAATCTAGGGAGAGCTGGTCTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTTGGTTCAAAATCAGTTATTCAGATTAGAAGTCATGCCCAGAAGTACTTCTTGAAAGTTCAAAAGAGCGGGACAGTAGCACATGTGCCTCCTCCTCGGCCTAAGCGCAAAGCTTCTCATCCTTATCCACAAAAGGCATCCAAAAATGTTTTGTTGCCAATGCCAGCTTCCATGGTTTATGTTTCTTCCACTAGTACCCTTCCACCAGGGTATGTCACATGGGATGAAAATTCCTTGCTCATGAATTCTGGATCCAACAAATCAGTGCCTTGTAAGGATGAGCTCGCCAATCTTCTTGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACGAATTGACCACAGCAGTCTTAGTGGTGTTGGGAACTCTACTAGAAATCTGCCTGCTACTGAGATGCCAAAACAAGGGAAACAGGCTCAGGTTATTCATGGTTTGCCAGATTTTGCTGATGTTTACAGCTTCATTGGAAGTGTTTTTGATCCAGACACAGAAGGCCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAAAAACCTCACTGTCAATTTGTCTAGTCCTGACTTTGAGCCCGTTAGGGAGGTCATGTCATCATACGATGTCCATACAAAAACAGTAGGAGTTACCGCAGGAATTGACGTCAAGAAGCAGACAAATGATCTATCATGTCAAACAGCTTGA
>Glyma19g36170.1 sequence type=predicted peptide gene model=Glyma19g36170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMKPSTSTSGSGKKIRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKSVIQIRSHAQKYFLKVQKSGTVAHVPPPRPKRKASHPYPQKASKNVLLPMPASMVYVSSTSTLPPGYVTWDENSLLMNSGSNKSVPCKDELANLLGNEADIGSKGITRIDHSSLSGVGNSTRNLPATEMPKQGKQAQVIHGLPDFADVYSFIGSVFDPDTEGHVQKLKEMDPINFETVLLLMKNLTVNLSSPDFEPVREVMSSYDVHTKTVGVTAGIDVKKQTNDLSCQTA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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