SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma19g36063): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma19g36063): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma19g36063

Feature Type:gene_model
Chromosome:Gm19
Start:43451120
stop:43452590
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g36063
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G02780AT Annotation by Michelle Graham. TAIR10: glutathione transferase lambda 1 | chr5:630957-632485 FORWARD LENGTH=235 SoyBaseE_val: 3.00E-58ISS
GO:0010731GO-bp Annotation by Michelle Graham. GO Biological Process: protein glutathionylation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG0406 KOG Glutathione S-transferase JGI ISS
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI ISS
PTHR11260:SF42Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_Q9FQ95UniRef Annotation by Michelle Graham. Most informative UniRef hit: In2-1 protein n=1 Tax=Glycine max RepID=Q9FQ95_SOYBN SoyBaseE_val: 5.00E-66ISS
UniRef100_UPI000233F5B1UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F5B1 related cluster n=1 Tax=unknown RepID=UPI000233F5B1 SoyBaseE_val: 4.00E-107ISS

Expression Patterns of Glyma19g36063
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g36063 not represented in the dataset
Glyma19g36063 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g36063 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g177000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g36063
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g36063
>Glyma19g36063.1   sequence type=CDS   gene model=Glyma19g36063   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTGCAGGTGTGGAAGAAATTCGTCCTCCTACGCTTGGTGCCATCTTCGAACCACCACCTCTCTTTGATGGAACAACCAGTGCCCATAATGCACAACGAGTATGGATCACTAGGAACCACAAGGGTTTACAAGACAAGATCAAATTGGGTCCTATTGACCTTATGAACAAGGCCTTGGTGTCATTTCTTGAATACAATGGCAAAGTTTTAGCAGCAGAGAGTATTGACTTGATTAAATATGTACATGCAAATTTTGAAGGACCATTATTATTTCCTACCGACCCCATCAAGAAGGAATCTGGAGAGGAACTATTAAAGTATGTTGATTTTTACAAAAGATGTGCGTCATTTGATTACGTGGAGAATGCTCTTGGTAAATTTGATGATGCGCCTTTCTTCCTTGGCGAATTTAGTTTGATGGATATTGCCTATGTTCCATTAGTTGAAAGGTCCCAAATTGTCTTCTCTGAAGTGTTCAAGCATGATATCCCAGTTGGAAGACCTAAATTAGCAACATGGATTAAG
Predicted protein sequences of Glyma19g36063
>Glyma19g36063.1   sequence type=predicted peptide   gene model=Glyma19g36063   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATAGVEEIRPPTLGAIFEPPPLFDGTTSAHNAQRVWITRNHKGLQDKIKLGPIDLMNKALVSFLEYNGKVLAAESIDLIKYVHANFEGPLLFPTDPIKKESGEELLKYVDFYKRCASFDYVENALGKFDDAPFFLGEFSLMDIAYVPLVERSQIVFSEVFKHDIPVGRPKLATWIK






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo