Report for Sequence Feature Glyma19g36000
Feature Type: gene_model
Chromosome: Gm19
Start: 43413582
stop: 43418103
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g36000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G53490 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02720.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19832666-19834024 FORWARD LENGTH=225
SoyBase E_val: 8.00E-71 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_C6TDV8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TDV8_SOYBN
SoyBase E_val: 7.00E-163 ISS
UniRef100_I0YSF8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Alternative oxidase n=1 Tax=Coccomyxa subellipsoidea C-169 RepID=I0YSF8_9CHLO
SoyBase E_val: 2.00E-08 ISS
Expression Patterns of Glyma19g36000
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g36000
Paralog Evidence Comments
Glyma03g33280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g36000 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g176300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g36000
Coding sequences of Glyma19g36000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g36000.1 sequence type=CDS gene model=Glyma19g36000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCCATGTCGTGCAATTCTCTTCTCCTTCTTTTCTCCTCCATATTCCTCACCTATTTCCCAGGATTGATTATATCTGCGGACGTGACGCTGAGCTCGATTGAGATCTTCACAACCCACGAGTTTCTTAAAGCCACTCCAACTGTCTATTTTCTGTGCAAAGGGGACAACAAAACCCAATTGCCTGACATCAAAAAACCCCATGTCTTTTATTCTTTTAAGGGTGAAGAGTCTTGGCAGCCTTTAACTAATTTCTCAGGTAAAAAGTGCAAGCGATGTGGAATCTATGAGGAAGACAAATTTCTTTCAGATGATGTGTTTGACGTGTGGGAATTCTGTCCTTCTGATTTTACTACCCCTGATGGAAGATACGTCCACTTCAAGGAAAAAGAATTCAATGCTAGTTTTCTGTGCCCAGAGTGCTTATCTTTTTCTGGTGCTTCTGTCTCTGCACCACCTGTCGAGAATCACAATCCCAATAAAAAAGGAATGAATGTAGCAGTTATCATTTTACTAAGTATTTTGGGCTCAACTATATTGATTCTGGGAATGTTGGGTGCATACAAGTATTGGCAAAAGAGGAAGAGGGAGCAGGATCAGGCTCGGTTTTTGAAGCTATTTGAAGAAGGAGATGACATTGAGGATGAGCTCGGCCTTGGCACTATAATATGA
Predicted protein sequences of Glyma19g36000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g36000.1 sequence type=predicted peptide gene model=Glyma19g36000 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSMSCNSLLLLFSSIFLTYFPGLIISADVTLSSIEIFTTHEFLKATPTVYFLCKGDNKTQLPDIKKPHVFYSFKGEESWQPLTNFSGKKCKRCGIYEEDKFLSDDVFDVWEFCPSDFTTPDGRYVHFKEKEFNASFLCPECLSFSGASVSAPPVENHNPNKKGMNVAVIILLSILGSTILILGMLGAYKYWQKRKREQDQARFLKLFEEGDDIEDELGLGTII*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
